PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0605s0027.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 187aa    MW: 20594.3 Da    PI: 7.8849
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0605s0027.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.2e-101866655
                         HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                         +  E++RR++++s ++eL +l+P+    +++      + L +A +YIk+Lq
  Kalax.0605s0027.1.p 18 KTTEKNRRNQMKSLYAELSSLVPHyT--TKADTAALPDKLDEAARYIKKLQ 66
                         578*********************54..55556666788***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.6861265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-111780IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-61871IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-111980IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-61966IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.45E-82170No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MDGRNKLPGS SVSSTDRKTT EKNRRNQMKS LYAELSSLVP HYTTKADTAA LPDKLDEAAR  60
YIKKLQVSLE KLRQKKEKLQ GGSVTGASSA VEGAFGHQNS LFEPHIDVHR MGSALEVVLV  120
TGLDHQFALF TSVLRALHEE GAEVGNASFY VASDKVFHII HSKVEEGAEE CRESKIQERL  180
HSLILH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012091614.19e-59uncharacterized protein LOC105649551
TrEMBLB9RBD13e-54B9RBD1_RICCO; DNA binding protein, putative
STRINGXP_002509465.16e-55(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.18e-35bHLH family protein