PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0606s0013.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 465aa    MW: 51579.9 Da    PI: 4.5449
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0606s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.1e-12279322755
                          HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          ++Er+RR+++N+++ +Lr+l+Pk +      Kl+ a+iL  A++++k+Lq
  Kalax.0606s0013.1.p 279 IAERKRRKKLNERLYKLRSLVPKiS------KLDRASILGDAIDFLKELQ 322
                          79*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.5E-132141IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.796272321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-16274336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.86E-13274326No hitNo description
PfamPF000107.4E-10278322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-14278327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-15279335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MEQLRTLVSV HGWECCVVWR VSKDQRFIEW LDCCCAGAEN LPQEPAFAAS QCRDSVILHS  60
RTKACDLLAQ FPPFMLMEDS GVYAETLISN QPRWLHLSQS STSADMPQFA TRLLMPVPGG  120
LIELVAARPV SENQHIIDCI AEYSNLPPEK EANSISSSTD MTAFYNEISL FGPKFETTSS  180
TDKFFDEFMN QLYNSSVKDG LLQGMDSMLV SDVSNTGVPV KGSGNDRGQQ GHDVMEAAGN  240
IEMGRSDSIS DCSDQLDEDD ADAIYRKKSG KGPQSKNLIA ERKRRKKLNE RLYKLRSLVP  300
KISKLDRASI LGDAIDFLKE LQKQKKDLED ELQQQQSDDE YHHEDTNPFL GQTEDTMDQD  360
QLEAQVEVSK IDGGDALFIK LLCENKPGSF VGVLEALDHL GLEVTNVNIN THETFVSNVL  420
LVQGKEGSCV MVEADSVKDS LLSTTRNSIP TGSLRRPNLA ARQQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1265286RKKSGKGPQSKNLIAERKRRKK
2280287ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022953123.11e-114transcription factor ABORTED MICROSPORES-like isoform X2
STRINGcassava4.1_029776m1e-111(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.12e-68bHLH family protein