PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0610s0023.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HB-other
Protein Properties Length: 470aa    MW: 50776.6 Da    PI: 5.1567
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0610s0023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.73e-061475756
                         --HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
             Homeobox  7 ftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
                         ft++++ e+e+   +  n+ p +e    LA+k            ++ +qV +WFqN+R+ +k
  Kalax.0610s0023.1.p 14 FTPSEVVEMEAILSEhnNKLPPRELFVTLADKFsngperigkiTVQMKQVWNWFQNKRYAMK 75
                         78888888888877554788888888888888888888888889999***********9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.84E-10480IPR009057Homeodomain-like
SMARTSM003890.0097781IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.7E-61382IPR009057Homeodomain-like
PROSITE profilePS500719.1671377IPR001356Homeobox domain
CDDcd000860.0031375No hitNo description
PfamPF167199.0E-36123250IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MGRPPGNGGP AFRFTPSEVV EMEAILSEHN NKLPPRELFV TLADKFSNGP ERIGKITVQM  60
KQVWNWFQNK RYAMKAKSNK SQAAKLDVAP LQAVPPLTPA ALAPALQSVP PVRQEVNGKA  120
PNNMEFEARS ARDGAWYDVA AFLSVRNKDT DDPEVLVRFV GLTPEEDEWI KVSKHVRHRS  180
LPCEASECVA VLPGDLILCF QEAPEQALYF DAHVLDAQRM KHDSRGCRCS FMVRYDHDQF  240
EEVVPLRKIC RRPETDYRLQ IYQALPGLPA QQKKIVQSSA CSAPLENNPV TESVQMPAQK  300
VDDNTAPASS APSSPVAREK NTAGSAEEGN PGHVTADNAS KLTRKAEESV DQDAETKRPR  360
RSDHTENPVA QDASTPAVMP ESDKQDEIQG VADSAVEQKG SSPRQQDPAA PCAVVKEKEA  420
VVSNDGAAVD DGDPNPGGGA LTCQNQTNGH TGGSGGGSSD VAVGVQQCF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A1e-421232543134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B1e-421232543134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A1e-421232543134SHH1 SAWADEE
4iur_B1e-421232543134SHH1 SAWADEE
4iut_A1e-421232543134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B1e-421232543134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A1e-421232543134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B1e-421232543134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A1e-421232543134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B1e-421232543134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015899220.11e-127protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2
SwissprotQ8RWJ71e-115SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A2P5AR391e-126A0A2P5AR39_PARAD; Octamer-binding transcription factor
STRINGAET030101e-127(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-114sequence-specific DNA binding transcription factors;sequence-specific DNA binding