PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0617s0018.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 251aa    MW: 27396.6 Da    PI: 6.7566
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0617s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.0002799121123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C + F ++  L  H++ H
  Kalax.0617s0018.1.p  99 FSCNYCRRKFYSSQALGGHQNAH 121
                          89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.19E-697127No hitNo description
PROSITE profilePS5015711.38599126IPR007087Zinc finger, C2H2
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MDLNMVAVPS NSDSEDESEI NNLVGSSNPA IPDSYFKCHD SIRDSSCLPN LRNSHLNHEA  60
VSLNLTLHSN ASKPIDDGSD PGTGLATQPP HVPRIQRLFS CNYCRRKFYS SQALGGHQNA  120
HKRERTMAKR AMKMGVFSHR YASLVSLPIH SHHAFGAMGL EAHALTHQSL GPPPPPCLYE  180
NNIHGFEHGG VPFFPEEDVG ELPWPGSFRP HDDSNNLLSE TEKSPPTHFA AMAAPVRSSS  240
SPIPDLTLRL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.17e-33zinc finger protein 4