PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0618s0008.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 300aa    MW: 33104.1 Da    PI: 9.4063
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0618s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-18100150256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           y+GVr+++ +g+WvAeIr p +   r r++lg++ tae Aa a+++a+ kl+ge
  Kalax.0618s0008.1.p 100 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYETAEAAAYAYDRAAYKLRGE 150
                          59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.74E-1599159No hitNo description
Gene3DG3DSA:3.30.730.107.2E-31100158IPR001471AP2/ERF domain
PROSITE profilePS5103223.235100157IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-22100157IPR016177DNA-binding domain
SMARTSM003803.6E-36100163IPR001471AP2/ERF domain
PRINTSPR003674.8E-10101112IPR001471AP2/ERF domain
PfamPF008471.1E-12101150IPR001471AP2/ERF domain
PRINTSPR003674.8E-10123139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MDSNNIIGSS LSQLLLAGGS GTNTIDSIFS YCSPSTSVSE QTSEPLGTSV YLRQRELVQK  60
FAEENRATVA FRRTMQHQMD LRNSLYAANM AGPSLSMKKL YRGVRQRHWG KWVAEIRLPQ  120
NRMRVWLGTY ETAEAAAYAY DRAAYKLRGE YARLNFPNLK DPSTLGFDDS RLSALKSSVD  180
AKIQAICQRV KREKAMKLSK KKSASTKSDH LIPEKSRKSD SPSSSSSVSP VQVSDSWGTE  240
TVSPTMSEDG LWNGENSSQQ AIWSTDGSMA GLADGFNDGY SLARIPSFDP ELIWEVLAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-2099157160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021689714.11e-104ethylene-responsive transcription factor ERF061-like isoform X1
RefseqXP_021689715.11e-104ethylene-responsive transcription factor ERF061-like isoform X2
RefseqXP_021689716.11e-104ethylene-responsive transcription factor ERF061-like isoform X3
SwissprotQ9C7W22e-66ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A1L6CAU27e-97A0A1L6CAU2_9ROSI; AP2/ERF domain-containing transcription factor
TrEMBLA0A1L6CB397e-97A0A1L6CB39_VERFO; AP2/ERF domain-containing transcription factor
STRINGXP_006439361.13e-96(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.13e-49ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]