PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0618s0024.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Nin-like

Protein Properties

Length: 764aa MW: 82952.4 Da PI: 7.1929

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0618s0024.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92	4.4e-29	585	635	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yFs+++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Kalax.0618s0024.1.p 585 EKTISLDVLQQYFSGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 635 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.598	574	655	IPR003035	RWP-RK domain
Pfam	PF02042	1.3E-26	587	635	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 764 aa Download sequence Send to blast
MAEPDEGKLC SGFPFHQHRN KADSNHPMDL DLDLDSSWPL DHVSFLPNPI SPFFISSSDQ 60 PFSPLWAFSD ADDDTRPSSA AAAAALSSAF RLPDYPRLFA LKSGHTDTTN GAPTEIDEKK 120 GLHPLPPASS LCGLEPDVSC VIKEKMTQAL RYFKESTEQH VLAQVWAPVK NGGRYVLTTS 180 GQPFVLDPHS NGLNRYRMVS LMYMFSVDEE SDGELGLPGR VFRQKLPEWT PNVQYYSSRE 240 YSRLDHALHY NVQGTLALPV FESSGQTCVS VVELIRTSQK INYAPEVDKV CKALEAVNLK 300 SSNILDHPKP QICNKGRQKA LSEILEVLSV VCESLKLPLA QTWVPCRHRN VLADGGGLRK 360 SCSSFDGSCM GQVCMSASDV TFYVVDAHLW GFRDACAEHH LQRGQGVAGR AFLTQSSCFC 420 GDITQFSKTE YPLVHYARLF GVKSSFAICL CSSLTGNDEY ILEFFLPPSL IDAGDQQALL 480 NSLLETMKLH FCSLRVASGR NLGEDMIQII EGSADEQLLE SVRHPPAPAA DTTNDRETGN 540 KVSSAKLVSE KTNGSNNAIN TAAVGGDLVG NTVTNKPERK RGKTEKTISL DVLQQYFSGS 600 LKDAAKSLGV CPTTMKRICR QHGISRWPSR KINKVNRSLT KLKRVIESVQ GSDSAFGLSS 660 LSPASLPAAG CSISWAANTN GSDRPNSPGL RTTELQGMRS ELPECKSPIS DGKAGNGVHS 720 PGSKTFDHEG SAHEHIPKVS KTRSGSREGS AGSPTSHGSC QGSA

Sequence ? help Back to Top

Protein Sequence Length: 764 aa Download sequence Send to blast

MAEPDEGKLC SGFPFHQHRN KADSNHPMDL DLDLDSSWPL DHVSFLPNPI SPFFISSSDQ  60
PFSPLWAFSD ADDDTRPSSA AAAAALSSAF RLPDYPRLFA LKSGHTDTTN GAPTEIDEKK  120
GLHPLPPASS LCGLEPDVSC VIKEKMTQAL RYFKESTEQH VLAQVWAPVK NGGRYVLTTS  180
GQPFVLDPHS NGLNRYRMVS LMYMFSVDEE SDGELGLPGR VFRQKLPEWT PNVQYYSSRE  240
YSRLDHALHY NVQGTLALPV FESSGQTCVS VVELIRTSQK INYAPEVDKV CKALEAVNLK  300
SSNILDHPKP QICNKGRQKA LSEILEVLSV VCESLKLPLA QTWVPCRHRN VLADGGGLRK  360
SCSSFDGSCM GQVCMSASDV TFYVVDAHLW GFRDACAEHH LQRGQGVAGR AFLTQSSCFC  420
GDITQFSKTE YPLVHYARLF GVKSSFAICL CSSLTGNDEY ILEFFLPPSL IDAGDQQALL  480
NSLLETMKLH FCSLRVASGR NLGEDMIQII EGSADEQLLE SVRHPPAPAA DTTNDRETGN  540
KVSSAKLVSE KTNGSNNAIN TAAVGGDLVG NTVTNKPERK RGKTEKTISL DVLQQYFSGS  600
LKDAAKSLGV CPTTMKRICR QHGISRWPSR KINKVNRSLT KLKRVIESVQ GSDSAFGLSS  660
LSPASLPAAG CSISWAANTN GSDRPNSPGL RTTELQGMRS ELPECKSPIS DGKAGNGVHS  720
PGSKTFDHEG SAHEHIPKVS KTRSGSREGS AGSPTSHGSC QGSA

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017973247.1	0.0	PREDICTED: protein NLP6
Swissprot	Q8RWY4	0.0	NLP6_ARATH; Protein NLP6
TrEMBL	A0A061G5G4	0.0	A0A061G5G4_THECC; Transcription factor, putative
STRING	EOY25090	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Kalax.0618s0024.1.p

Publications ? help Back to Top
Liseron-Monfils C, et al. Nitrogen transporter and assimilation genes exhibit developmental stage-selective expression in maize (Zea mays L.) associated with distinct cis-acting promoter motifs. Plant Signal Behav, 2014. [PMID:24270626] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968]