PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0619s0011.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HB-other
Protein Properties Length: 614aa    MW: 67064.1 Da    PI: 4.8703
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0619s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox14.85.1e-051474755
                         --HHHHHHHHHHHH..HSSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
             Homeobox  7 ftkeqleeLeelFe..knrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                         f++ ++ e+e+  +  +n+ p +e    +A+k            ++++q+ +WFqN+R+  
  Kalax.0619s0011.1.p 14 FNSAEVLEMETILQdhNNMMPAREVLVSIADKFsnsperrgkfVVQTKQIWNWFQNKRYAI 74
                         6666677777777733488888888888888888888888888899************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.64E-81277IPR009057Homeodomain-like
CDDcd000860.008691375No hitNo description
PROSITE profilePS500718.6161377IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.6E-51380IPR009057Homeodomain-like
PfamPF167191.1E-40158284IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
MGRPPSNGGP AFRFNSAEVL EMETILQDHN NMMPAREVLV SIADKFSNSP ERRGKFVVQT  60
KQIWNWFQNK RYAIRARTSK TPTKLIVSSM QPTSTIAPLH AVPVISTMPA VQAKPTVPVA  120
PSAQAIPVVT REDNFSSSGL PQSVAAPPGR SSADNIPMEF EARSARDGAW YDVTAFLSLK  180
NLEAGDPEVL VRFAGFGPEE DEWINVRKHV RHRSLPCESS ECVAVLPGDL ILCFQEGKEQ  240
ALYFDAHVLD AQRRRHDVRG CRCRFLVRYD HDQSEEIVPL RKICRRPETD YRLLQLHAMN  300
ESSAEHRKSA SSTEQHKSTS SAEQHKSVSS VEQIKSHIDS PFPKAGICNF SALSTQKALA  360
PNLHVNVSEI SEEHKGATDC SSDKTIGDTN IALSSTQHSL PEVINLDPEI EVERNTHEVK  420
DLTDDMAVDE NNIHEVKGAN DDMAVDEPLE KQFLTVEETD AMPICGIDAT TKTCLTVVKP  480
SSEMNGTTSQ NATQVLKKEV SVATGTGNVP VAEGDEPELM MVERNSTTDE GLAKFDPIKT  540
DPTSSTDLNL TREMKIPETS LLAGAEVISA DSSIPAVKSS EITNITLESG VPDEGGVTHE  600
VKTDVDLANA NPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A3e-451522881134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B3e-451522881134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A3e-451522881134SHH1 SAWADEE
4iur_B3e-451522881134SHH1 SAWADEE
4iut_A3e-451522881134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B3e-451522881134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A3e-451522881134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B3e-451522881134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A3e-451522881134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B3e-451522881134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015899220.11e-153protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2
TrEMBLA0A2P5AR391e-148A0A2P5AR39_PARAD; Octamer-binding transcription factor
STRINGEOY131341e-148(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-126sequence-specific DNA binding transcription factors;sequence-specific DNA binding