PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0620s0016.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 642aa    MW: 70217.3 Da    PI: 6.9626
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0620s0016.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.92.2e-24106207199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW++Fv+ ++L +gD++vF 
  Kalax.0620s0016.2.p 106 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TILAKDVHGQTWKFRHIYRGTPRRHLLTTGWSNFVNHKKLVAGDSIVFL 193
                          89****************************997556555..89*********************************************** PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            + +++el+v+v+r+
  Kalax.0620s0016.2.p 194 --RAENGELCVGVRRA 207
                          ..449999******97 PP
2Auxin_resp112.15.5e-37260343183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                          a++ a+++++Fe+vY+Pra+t+eF+v+++ v++a++v+++ GmRfkm fetedss++++ +Gt+++ + +dpvrWpnS+Wr+L+
  Kalax.0620s0016.2.p 260 AVSLAASGKPFEIVYYPRAGTPEFCVRASVVSEAMRVQWCCGMRFKMPFETEDSSRISWfMGTISAAQVADPVRWPNSPWRLLQ 343
                          678899****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-2999209IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-3699208IPR015300DNA-binding pseudobarrel domain
CDDcd100172.17E-22105206No hitNo description
SMARTSM010192.3E-21106208IPR003340B3 DNA binding domain
PROSITE profilePS5086313.394106208IPR003340B3 DNA binding domain
PfamPF023624.5E-22106207IPR003340B3 DNA binding domain
PfamPF065072.8E-32260343IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MDKCLDPQLW HACAGGMVQM PPVGTNVFYF PQGHSEHASA NVDFRAFAKL PSMFLCRVSA  60
VKYMADPDSD EVFAKIRLLP TNVFDLAADD AAFSGAVDDQ DPPASFAKTL TQSDANNGGG  120
FSVPRYCAET IFPRLDYTAD PPVQTILAKD VHGQTWKFRH IYRGTPRRHL LTTGWSNFVN  180
HKKLVAGDSI VFLRAENGEL CVGVRRAKPG IGGCDPQFCW NPAGGNFEST YGGGDDDRKR  240
MQVGDGRMRG KVKAESVLEA VSLAASGKPF EIVYYPRAGT PEFCVRASVV SEAMRVQWCC  300
GMRFKMPFET EDSSRISWFM GTISAAQVAD PVRWPNSPWR LLQVAWDEPD LLQNVKRVSP  360
WLVEVVSNMP SVHLTPFSPP RKKVRLPQHP DFPLLGQFPV LQQSEFPSVG HFPLPPLAKN  420
LLGTNSPFPA GIQGARHGQF GLSSSDLHFN KLQSGLFPVK FQQLSKAPGP DSRMSSSDFP  480
SNKCQENDGR CCSLTMGRNV PEKISNALKA PMFVLFGQPI LTEEQISQSS SDDTIGNSSS  540
EGNQEKVANV VSDASRFGGN RNGHMENSSN DGSPWLKDHS MTELKLETGH CNDASPPLGF  600
SILSSYGDLH TKLTHMFSNG EGLEVLRTQL ATNPLGTDPS S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-82536551389Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316370.30.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2K1YYK20.0A0A2K1YYK2_POPTR; Auxin response factor
TrEMBLA0A385JIK60.0A0A385JIK6_POPTO; Auxin response factor
STRINGPOPTR_0010s23000.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]