PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0622s0008.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 503aa MW: 55577.3 Da PI: 7.3147

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0622s0008.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00063	421	443	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k+F++ L H r+H Kalax.0622s0008.1.p 421 HECPICFKVFRSGQALGGHRRVH 443 79*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.21E-7	102	125	No hit	No description
Pfam	PF13912	5.2E-5	103	127	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.018	103	125	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.177	103	130	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	105	125	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	4.21E-7	416	443	No hit	No description
PROSITE profile	PS50157	10.97	421	448	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.4E-9	421	445	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.076	421	443	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	423	443	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence Send to blast
MKRVSKVSSS KARAAAAAAV AEHFEAAEED MTTRKAKFEP LYEYDDEEED EEDDEGDDEE 60 EEGVCGLRQN PRKTWRISTS KNGGNYHQKQ EKPMRQELQQ QKFVCSKCGK AFQSSKAMCG 120 HMACHSEKEK ASSNVVPKQK QLVMDSHSDT ESGAKNQQRR PRRTRYKKHT SVAAADSSKA 180 KKVDAFHHHP QQQLNQQQNY NNCSSGASGV EQEQEEVAIC LMMLSRDSGN WGGLNSIGDS 240 SDNNSVVLEA RSISTKLKNM DALRSSGVDV GDGVKKCGSR KVKTFDNSES GYVRNRAEIA 300 VADVKIKNLR KRKLEEGSKP EPHLNTKKLK IVTEGGSKME AYPTVNESYS AEMYGRFDDK 360 ALIDSQSHQA FGPNANVESY ATGSHGSSKN RFETDQTRKG KDIAEHDSGN VGGGWRKGVK 420 HECPICFKVF RSGQALGGHR RVHLAEESPE ESKSGEVAAN FKPNGAHIHH FIDLNLPAPV 480 EDEEDASESM ASYGRSQAHY QA*

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence Send to blast

MKRVSKVSSS KARAAAAAAV AEHFEAAEED MTTRKAKFEP LYEYDDEEED EEDDEGDDEE  60
EEGVCGLRQN PRKTWRISTS KNGGNYHQKQ EKPMRQELQQ QKFVCSKCGK AFQSSKAMCG  120
HMACHSEKEK ASSNVVPKQK QLVMDSHSDT ESGAKNQQRR PRRTRYKKHT SVAAADSSKA  180
KKVDAFHHHP QQQLNQQQNY NNCSSGASGV EQEQEEVAIC LMMLSRDSGN WGGLNSIGDS  240
SDNNSVVLEA RSISTKLKNM DALRSSGVDV GDGVKKCGSR KVKTFDNSES GYVRNRAEIA  300
VADVKIKNLR KRKLEEGSKP EPHLNTKKLK IVTEGGSKME AYPTVNESYS AEMYGRFDDK  360
ALIDSQSHQA FGPNANVESY ATGSHGSSKN RFETDQTRKG KDIAEHDSGN VGGGWRKGVK  420
HECPICFKVF RSGQALGGHR RVHLAEESPE ESKSGEVAAN FKPNGAHIHH FIDLNLPAPV  480
EDEEDASESM ASYGRSQAHY QA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	306	312	KNLRKRK
2	308	313	LRKRKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	5e-43	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Kalax.0622s0008.1.p