PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0625s0001.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 425aa MW: 45845.6 Da PI: 8.9531

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0625s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	191	212	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C++Cg+ Fs ++ + H + H Kalax.0625s0001.1.p 191 CHKCGEQFSEWEAVEAHHLSmH 212 *****************98877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	191	212	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	9.21E-22	214	423	No hit	No description
Gene3D	G3DSA:3.90.228.10	6.3E-7	240	416	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence Send to blast
MATVWLSLKN SMHCKSGPTD VHDPKSRTHL STILTKKIGR SGCSRSIANL KDVIHGSKRH 60 LDRPPSCSPR SIGSSDFLNP ITHEVILSNS RCELKITSFA GFQDGTNDGG RWCTSGVGGS 120 TFVGTLRPGT PGPGGKTAIS PFYKNSSWAT PGISPLLSSD KQGSGLGGAQ LSQHWCSFGA 180 DSNSASSSVA CHKCGEQFSE WEAVEAHHLS MHAVTELVEG DSSRKVVEII CRTSCLKAEN 240 PCGRIEKVLK VHNMQKTRAR FEEYREAIKI KANKLPTKHP RCLADGNELL RFYGTTVSCS 300 LGLYGRSSLC IVDKCCVCRI LRNGFSAKKE LKCGIGVFTT STSGRAFEII ETLEDNGPSI 360 RKAVIVCRVI AGRIHKPLEN IQDIAGQSGF DSLAGKVGLY SNIEELYLLN PKALLPCFVV 420 ICKS*

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence Send to blast

MATVWLSLKN SMHCKSGPTD VHDPKSRTHL STILTKKIGR SGCSRSIANL KDVIHGSKRH  60
LDRPPSCSPR SIGSSDFLNP ITHEVILSNS RCELKITSFA GFQDGTNDGG RWCTSGVGGS  120
TFVGTLRPGT PGPGGKTAIS PFYKNSSWAT PGISPLLSSD KQGSGLGGAQ LSQHWCSFGA  180
DSNSASSSVA CHKCGEQFSE WEAVEAHHLS MHAVTELVEG DSSRKVVEII CRTSCLKAEN  240
PCGRIEKVLK VHNMQKTRAR FEEYREAIKI KANKLPTKHP RCLADGNELL RFYGTTVSCS  300
LGLYGRSSLC IVDKCCVCRI LRNGFSAKKE LKCGIGVFTT STSGRAFEII ETLEDNGPSI  360
RKAVIVCRVI AGRIHKPLEN IQDIAGQSGF DSLAGKVGLY SNIEELYLLN PKALLPCFVV  420
ICKS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021606656.1	0.0	uncharacterized protein LOC110610892
TrEMBL	A0A2C9W6P3	0.0	A0A2C9W6P3_MANES; Uncharacterized protein
STRING	cassava4.1_008244m	0.0	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-118	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Kalax.0625s0001.1.p