PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0625s0012.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 325aa MW: 36858.3 Da PI: 7.0244

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0625s0012.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.6	1.2e-06	162	181	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 y+Cp C ksFsr nL+ H+ Kalax.0625s0012.1.p 162 YSCPVCFKSFSRYNNLQMHM 181 99*****************9 PP
2	zf-C2H2	15	7e-05	246	268	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C ksF k + ++H +++ Kalax.0625s0012.1.p 246 FTCRKCQKSFAVKGDWRTHEKNC 268 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.15E-5	153	184	No hit	No description
PROSITE profile	PS50157	10.596	162	189	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.13	162	184	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.5E-7	162	181	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	164	184	IPR007087	Zinc finger, C2H2
SMART	SM00355	40	246	266	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MKDLLSPNRS VTKNGLSYFN FIPLNPNPNP FPRTLPLLNN FEPPHSSQAP TPMDEDYDDS 60 FCNRGRSEGG NSVAPLSLNI GLPDDETYSS TVVSPSSSGS KLLELQKNLF GDQSFREEGE 120 EDEDHDNEIG FLQCTSLKNL EKSVTQYWIP TPTQILIGPT QYSCPVCFKS FSRYNNLQMH 180 MWGHGSQYRK GLESLRVIQP RAMLRLPCYC CSQSCKHHID HPKSRPLKDF RTLQTHYKRM 240 HGTKTFTCRK CQKSFAVKGD WRTHEKNCGK FWYCTCGSDF KHKRSLKDHI RAFGDDGQVG 300 HAAIGIEDDL EHDGDDHGCV IESE*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012065547.1	1e-100	zinc finger protein WIP2
Refseq	XP_022759454.1	1e-100	zinc finger protein WIP2-like
Swissprot	Q9SVY1	8e-95	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A2R6RD16	1e-101	A0A2R6RD16_ACTCH; Zinc finger protein
STRING	XP_008795700.1	7e-99	(Phoenix dactylifera)
STRING	Si006616m	1e-98	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	7e-93	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Kalax.0625s0012.1.p

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]