PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0626s0015.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 238aa    MW: 26375 Da    PI: 8.5981
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0626s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157e-0578100123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+C+ C + F++   L  H+++H
  Kalax.0626s0015.1.p  78 YTCSFCRREFKSAQALGGHMNVH 100
                          9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.55E-675104No hitNo description
PfamPF139121.8E-578101IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.15778105IPR007087Zinc finger, C2H2
SMARTSM003550.005278100IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MDGHNMIEQA ESKQVMWMNR KQVLMPSLLF SSSMVRASGR AAAAVASTYD QYESWEERAF  60
AEDAARGLGG FIWPPRSYTC SFCRREFKSA QALGGHMNVH RRDRARLKQA LSPRRSDTKA  120
DFSPQQQTTS IVTSSEESTK VAVGGGDLLN KQERPCVLKS SGQEKEYDVS TRLCMGLSLD  180
EVAKCKKLKS ASFVLVEPCL AVVQSSPSNH HDARQHGLIQ SKMSLMEELD LELRLGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-1373100229superman protein
2l1o_A1e-1373100229Transcriptional regulator SUPERMAN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.12e-28zinc-finger protein 10