PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0628s0003.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 557aa    MW: 62386 Da    PI: 6.4724
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0628s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.43e-4961331128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lp G+rF+Ptdeel+++yL++k++g+++++ ++i+e+d++k+ePw+Lp    + ++  ew+fF+ rd+k ++++r nr+t++gyWkatgk
  Kalax.0628s0003.1.p   6 LPLGYRFRPTDEELIDFYLRNKINGHHHHV-TIIREIDVCKWEPWELPgLsVLPSDGGEWFFFAARDQKFPNSQRLNRSTQRGYWKATGK 94 
                          699************************999.89***************6335566777******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d+++++ +g++vg+k++Lvfy+grap+g++t+Wvmheyr 
  Kalax.0628s0003.1.p  95 DRKIKK-RGRDVGMKRSLVFYTGRAPSGKRTNWVMHEYRT 133
                          *****9.999****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-573156IPR003441NAC domain
PROSITE profilePS5100553.8776156IPR003441NAC domain
PfamPF023655.3E-267132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MSLYALPLGY RFRPTDEELI DFYLRNKING HHHHVTIIRE IDVCKWEPWE LPGLSVLPSD  60
GGEWFFFAAR DQKFPNSQRL NRSTQRGYWK ATGKDRKIKK RGRDVGMKRS LVFYTGRAPS  120
GKRTNWVMHE YRTTLKELDA THPGQGAYVL CRLFKKNDDT IEDSHHDEVQ SVATSPISAA  180
SNLHIKSETE DIFTSGHINN LDPGRCVAGN FDKPAPLPLT PGEGSNMCCS PLDSSGTQPR  240
DITETIMTMT AINSASQSHL QGDLGSSFPI TSSFNECEWP LQCGTGKQND IFEYLDSVGI  300
HDLCRDIDSH EKISPFQDET MNTDHVLKLT ISRDESNFGR GLDPEVSLEQ LFTELEGNCL  360
SATGHTIPAF SESAVDPENT LFNSDDLEFD LKHYFEDVSF DGSLFYPLSN SSNEQLGTSA  420
IGDTGITLRA SNQVNQPGTF DFQSQGNAAR RILLQQRVGS VYHCNHAISH QLEAKSVVSQ  480
EVDLNNVKLI SRTIAPRKWP LFASHGKSKR RPEEFHIQLG KKHKIWAAFA AVLFTVLIGF  540
PGMKLLGKTH MLLDWP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-43615915171Stress-induced transcription factor NAC1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.17e-71NAC transcription factor-like 9