PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0628s0018.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Nin-like

Protein Properties

Length: 142aa MW: 16821.1 Da PI: 11.0973

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0628s0018.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84.2	1.2e-26	26	75	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++le+++kyF++pi+ AAk+++v+lTvLK++CR ++I+RWPhRkiksl Kalax.0628s0018.1.p 26 STLELEEIQKYFDMPITLAAKKMNVGLTVLKKRCRDLNIMRWPHRKIKSL 75 689*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.427	9	96	IPR003035	RWP-RK domain
Pfam	PF02042	5.9E-23	27	75	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MRRDMKEARK PQAGTRKRVS RFTKSSTLEL EEIQKYFDMP ITLAAKKMNV GLTVLKKRCR 60 DLNIMRWPHR KIKSLKSLIS NVKELGLEKE IQMLEEHRMT VEKMPHVELT EKTKKLRQAC 120 FKANYKKRRQ VQASRCFCLI K*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021297552.1	5e-57	protein RKD4
Swissprot	Q9LVU8	1e-43	RKD4_ARATH; Protein RKD4
TrEMBL	A0A061G154	3e-54	A0A061G154_THECC; RWP-RK domain-containing protein, putative
TrEMBL	A0A2G9G3C3	2e-54	A0A2G9G3C3_9LAMI; Uncharacterized protein
STRING	EOY23580	5e-55	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	5e-46	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Kalax.0628s0018.1.p

Publications ? help Back to Top
Azpeitia E,Davila-Velderrain J,Villarreal C,Alvarez-Buylla ER Gene regulatory network models for floral organ determination. Methods Mol. Biol., 2014. 1110: p. 441-69 [PMID:24395275]