PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0629s0005.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bZIP
Protein Properties Length: 152aa    MW: 17425 Da    PI: 10.8299
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0629s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.63.1e-1463121563
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          +++rr+++NRe+ArrsR RK+  ++eL + v  + +eN+ L+ +l+++ + ++k+ +e+
  Kalax.0629s0005.1.p  63 RKQRRMISNRESARRSRMRKQRHLDELWRHVMRFRNENRNLIVKLNSMYESIDKMVQEN 121
                          79*************************************************99999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-1359123IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.73761124IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1708.3E-1063135No hitNo description
SuperFamilySSF579595.63E-1163113No hitNo description
PfamPF001701.2E-1263121IPR004827Basic-leucine zipper domain
CDDcd147022.14E-1664112No hitNo description
PROSITE patternPS0003606681IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MSGANYVVPD SAATMFLGSS SVTHCSAPSQ HCNGFLGPPL KDLALQPQHS LSSKNSTFVI  60
DERKQRRMIS NRESARRSRM RKQRHLDELW RHVMRFRNEN RNLIVKLNSM YESIDKMVQE  120
NAKLKEETSD LRLMLRTLKI GSPYKWLTGF G*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17582RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027095835.14e-42basic leucine zipper 43-like
SwissprotQ9FMC29e-27BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A068TW228e-41A0A068TW22_COFCA; Uncharacterized protein
STRINGVIT_01s0010g00930.t011e-39(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13600.16e-35basic leucine-zipper 58
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]