PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0633s0002.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 707aa    MW: 77473.8 Da    PI: 8.3267
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0633s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.71.1e-23107208199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g+ W++++iyr++++r++lt+GW+ Fv++++L +gD++vF 
  Kalax.0633s0002.1.p 107 FAKTLTQSDANNGGGFSVPRYCAETMfprldytADPPVQ--TVVAKDVHGELWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL 194
                          89*********************999****997556555..8************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            +++++el+v+++r+
  Kalax.0633s0002.1.p 195 --RTESGELCVGIRRA 208
                          ..5599********97 PP
2Auxin_resp115.25.8e-38278361183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                          aa+ a+++++FevvY+Pra+t+eF+v ++ v++a+++++++GmRfkm fetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+
  Kalax.0633s0002.1.p 278 AATLAAKGQPFEVVYYPRACTPEFCVAASAVKAAMRIQWCPGMRFKMPFETEDSSRISWfMGTVSSVQVADPLRWPNSPWRLLQ 361
                          68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.3E-3797211IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-29100210IPR015300DNA-binding pseudobarrel domain
CDDcd100176.54E-21106207No hitNo description
SMARTSM010191.5E-20107209IPR003340B3 DNA binding domain
PROSITE profilePS5086313.084107209IPR003340B3 DNA binding domain
PfamPF023626.0E-22107208IPR003340B3 DNA binding domain
PfamPF065071.1E-32278361IPR010525Auxin response factor
PROSITE profilePS5174518.516593673IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MERSLDSQLW HACAGGMVQM PKVNSRVFYF PQGHAEHAQA SLDFGVSPKV GPLVPCRVAS  60
VQFLADPETD EVYAKIRLVP VGNREMEFDV DDLGSRGRES VDKPASFAKT LTQSDANNGG  120
GFSVPRYCAE TMFPRLDYTA DPPVQTVVAK DVHGELWKFR HIYRGTPRRH LLTTGWSTFV  180
NQKKLVAGDS IVFLRTESGE LCVGIRRAKR GIESGSGGVG SQSGWNASPG HFISPYGGGG  240
GGYSVFLRDD ENGFLRNGCG EGGLKTNKKV KAESVIEAAT LAAKGQPFEV VYYPRACTPE  300
FCVAASAVKA AMRIQWCPGM RFKMPFETED SSRISWFMGT VSSVQVADPL RWPNSPWRLL  360
QVTWDEPDLL QNVNRVSPWL VELVSNMPVM NMSPFSPPRK KLRFPPHPDF PLDRPLSLSS  420
FSGNNLGPGS SLCCLTDSTP PSIQGARHAQ FGISLSDIHF NNKLHSSSGM FPPRVNQFPR  480
FFSNIISSNE SGSCLLSIGN SNHTIEKPKD SKKQPFVLFG QPILTEQEIT LRHSSESSAK  540
ALTRNNSSDD YQMNHEKLHL TSLELRRSLS DTSSHAGFSR LFGFPSDEHN MGSGLCKVFM  600
GDDNVGRTLD LSAIQSYQEL CLKLAELFGI EKPGALSHIL YHDAMGALKR VGDEPFSDFR  660
RSAKNLTITV DPGNSNGREQ RVLGLGKAES RLCSSKTATG PLSILA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-73538251388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023882698.10.0auxin response factor 18
RefseqXP_023882705.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2N9HWN20.0A0A2N9HWN2_FAGSY; Auxin response factor
STRINGXP_010253698.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]