PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0636s0017.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRF
Protein Properties Length: 578aa    MW: 61580.7 Da    PI: 8.1035
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0636s0017.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC72.74.3e-23214258145
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                          d+epgrCrRtDGKkWRC ++++ g+k+CE+Hl+rgr+rsrk++e 
  Kalax.0636s0017.1.p 214 DPEPGRCRRTDGKKWRCAKDAVHGHKYCEKHLNRGRHRSRKPVEG 258
                          79****************************************985 PP
2QLQ51.23.7e-18143178237
                  QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                           FT +Q+ +L++Q+l+yKy+aan+ vP++L+ +i+k
  Kalax.0636s0017.1.p 143 LFTQNQWFELEQQALIYKYIAANVSVPSNLIIPIKK 178
                          6*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.6E-10142178IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.477143178IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.9E-13144176IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.911214258IPR014977WRC domain
PfamPF088792.4E-19215257IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MLHGGAVEAA AAGVMDFGTK PKSDRPESAK RERSEDGQVG GGGQRRAKAA GKGGVDAMLL  60
MSSSAGGVVE GQLGSGSLVF EDERNMLSFS SPGGAEDEKM GHNAALQLCY PQSVCSRTSG  120
EFGLGGSLTS PNMHAPFAGA RQLFTQNQWF ELEQQALIYK YIAANVSVPS NLIIPIKKSF  180
NPWGLPASIS PNGSLSSSSF GWGPFHLGFH GSTDPEPGRC RRTDGKKWRC AKDAVHGHKY  240
CEKHLNRGRH RSRKPVEGQK PDQSVAGAAN FANKVAPMAS SLSKASVMPG GRSANGLAAK  300
GAHSTLNPST DLITKRTQDL QGISMLSPAI SLGSKDASFA IPKPKDPFEE SYQSEFGFVS  360
SDYLQNPYQK ISSCLNSSFV DFSDQDSRDQ HQLRQFMEDW PKERSEHSSL TWQDEIKPDW  420
TKLSMSIPVV SSGFSSSASS PTHERLALSP LRLGLEFHQN EMGANEFGEP FHKDPAYMPW  480
GSSAGGPLGE VLKISSSKRP HVENPSGLNL MTKGWDGAKA QFEPSPTGVL LKSAFGSLSN  540
SSAGSSPRGE SRMTSEAGSL CNEAPGSTTL VSSLPFS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015890408.11e-148growth-regulating factor 1 isoform X1
TrEMBLA0A438FBN51e-142A0A438FBN5_VITVI; Growth-regulating factor 1
TrEMBLA0A438KQ721e-142A0A438KQ72_VITVI; Growth-regulating factor 1
STRINGVIT_00s0494g00010.t011e-142(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.12e-73growth-regulating factor 1