PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0636s0022.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 253aa    MW: 28281.2 Da    PI: 9.2789
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0636s0022.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.52.6e-19115169256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ +++k+q ++Lee F+++++++ ++++ LA++l+L+ rqV vWFqNrRa+ k
  Kalax.0636s0022.1.p 115 RKKLRLKKDQAQVLEERFKQQSTLNPKQKQALARQLNLSPRQVEVWFQNRRARTK 169
                          6778899**********************************************98 PP
2HD-ZIP_I/II118.92.7e-38115203190
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rl+k+q+++LEe F+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+dye+Lk+++++l+een+rL ke +eL+ +
  Kalax.0636s0022.1.p 115 RKKLRLKKDQAQVLEERFKQQSTLNPKQKQALARQLNLSPRQVEVWFQNRRARTKLKQTEQDYEYLKKCCESLTEENRRLIKELKELK-A 203
                          69*************************************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-1899173IPR009057Homeodomain-like
SuperFamilySSF466891.92E-18103172IPR009057Homeodomain-like
PROSITE profilePS5007117.572111171IPR001356Homeobox domain
SMARTSM003892.4E-15113175IPR001356Homeobox domain
PfamPF000468.9E-17115169IPR001356Homeobox domain
CDDcd000865.24E-17115172No hitNo description
PROSITE patternPS000270146169IPR017970Homeobox, conserved site
SMARTSM003407.6E-19171214IPR003106Leucine zipper, homeobox-associated
PfamPF021833.3E-10171205IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MDYHGCSNIG LHLKLGSEFA GHPPRTLTHI NLNRKNDHQA LMKPCFELPL LSLGLGHHED  60
GGNQVDQGIV VKPGVKGETS GQSTVSSFSN SGLSVKRERS YEDEDYNCFS NDGVRKKLRL  120
KKDQAQVLEE RFKQQSTLNP KQKQALARQL NLSPRQVEVW FQNRRARTKL KQTEQDYEYL  180
KKCCESLTEE NRRLIKELKE LKALKPAQPN CITLPAATLS ICPSCEGVTT TPARGDCPAK  240
PKFFNTAPSA AY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163171RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021631568.15e-64homeobox-leucine zipper protein HAT22-like
SwissprotP466653e-54HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A2C9UQH41e-62A0A2C9UQH4_MANES; Uncharacterized protein
STRINGcassava4.1_013986m2e-63(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.15e-45homeobox from Arabidopsis thaliana