PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0637s0007.4.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NF-YB
Protein Properties Length: 161aa    MW: 17291.3 Da    PI: 5.6716
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0637s0007.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB181.95.2e-5727124198
                NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 
                          vreqdrflPian+srimkk+lPan+ki+kdaketvqecvsefisfvtseasdkc +ekrkt+ngddllwa++tlGfedy++pl++yl++y
  Kalax.0637s0007.4.p  27 VREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFVTSEASDKCLKEKRKTVNGDDLLWAMGTLGFEDYIDPLRLYLNQY 116
                          69**************************************************************************************** PP

                NF-YB  91 relegekk 98 
                          re+eg++k
  Kalax.0637s0007.4.p 117 REIEGDTK 124
                          *****975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.107.6E-5323137IPR009072Histone-fold
SuperFamilySSF471133.57E-4030144IPR009072Histone-fold
PfamPF008088.0E-283397IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.2E-186179No hitNo description
PROSITE patternPS0068506480IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.2E-188098No hitNo description
PRINTSPR006151.2E-1899117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MAEAPASPGG GGSHDSGGDH SPRSNNVREQ DRFLPIANIS RIMKKALPAN GKIAKDAKET  60
VQECVSEFIS FVTSEASDKC LKEKRKTVNG DDLLWAMGTL GFEDYIDPLR LYLNQYREIE  120
GDTKGTAKGG DASAKKDTGV HPQESNVLGQ HMIVPMQGSE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A9e-4726118193NF-YB
4awl_B9e-4726118294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A9e-4726118294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015969981.11e-87nuclear transcription factor Y subunit B-10
RefseqXP_015969982.11e-87nuclear transcription factor Y subunit B-10
RefseqXP_025605060.11e-87nuclear transcription factor Y subunit B-10
SwissprotQ8VYK41e-81NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A2P5D7G03e-86A0A2P5D7G0_PARAD; Nuclear transcription factor Y subunit B
STRINGXP_004493942.12e-86(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.15e-73nuclear factor Y, subunit B10
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]