PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0638s0009.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HB-other

Protein Properties

Length: 960aa MW: 105522 Da PI: 7.8803

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0638s0009.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	19.8	1.3e-06	71	126	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++R ++++ + ++++F+ + ++s++e +e++++ g+t +qV+ +F +R + + Kalax.0638s0009.2.p 71 KKPRDLLNPKAVAYMQSVFAIKDKISKKETREISAQFGITLSQVRDYFASQRSRVR 126 79999***********************************************9977 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.22	68	128	IPR001356	Homeobox domain
SMART	SM00389	8.5E-4	70	132	IPR001356	Homeobox domain
CDD	cd00086	6.66E-5	71	126	No hit	No description
SuperFamily	SSF46689	1.97E-6	71	130	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.5E-7	71	137	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 960 aa Download sequence Send to blast
MDGLSARLAA EEEGIGTSME SFQKCLESQK DLFHSQLIEM KRIVSAQCKL TGVNPLSQEM 60 AAGALSIAIG KKPRDLLNPK AVAYMQSVFA IKDKISKKET REISAQFGIT LSQVRDYFAS 120 QRSRVREIVQ SSQEVSRDKS KMLKDLQNGN HENKGSTMHS DPGPFIDAGP VTCDTNIANA 180 VKPEINETAA SSASRPTETD IGTARCDSPE FSLATCIPVT DEDDVTDEPS RSEIATHKST 240 ASTYAEPVPL NVVPPTISET PASNSSGICD ARMQPKLTKG EVLPELDGSD KNFVENIFNL 300 MSKEETFSGQ VNLMEGILKI ESPSVLDWFL SKGGVMILAT WLRQAAVEEQ TSVLHIILKV 360 LCHLPLAKAL PEKMSVILQS VNSLRFYRSQ DISNKARICL ARWSKLFAKS QPMMKLNGVK 420 SQIEVAKLKL LTQSINEING DESRQSELEN TDGSLTSSNQ ANGNLRKRER PLQMEMLTAS 480 PEDSVKRISM GLSSSQGKGR RKVQLVEHIG QRATGSSQQA VRASVSQSRP MSTDDIQKAK 540 LRKEVMEAKY GKKKSEPGSH KPGVPSAIVQ ASRVPTQPVP HERRNSKLPL PKNLTEHKPP 600 VTPHPYQTDE KKQNLLPLEN KDELKQPMVP LQNSTVGLEQ PTASFANNTD EQPMMQAVKS 660 TVEQMQTVVP LLNSNMKSQV LPENIAEQIQ ATVSISRSTA EPQVNSNGSA EKREQIISIS 720 NSIVQKVPRP KKTIPETKEP FWKQCKRVQI PWKTPPEMVI DTEWRVGSGQ NSRELRDQKV 780 RNKREKEFVY QRHEEIPPNP KNPWENEIDY DDTLTPIIPT EQLIDTSDPL QSQNSISVET 840 GNTLQMGSVA HTPAPSSLTG TVSGSEHDPV LLNALLKNPA LVFKLTSGQT ANMTSEDTVR 900 LLDMIKATAG AFPIGNVTHN LSNGSRVSEE RVEGSLPSPT PSSNFGTVRD SGLCCITCK*

Sequence ? help Back to Top

Protein Sequence Length: 960 aa Download sequence Send to blast

MDGLSARLAA EEEGIGTSME SFQKCLESQK DLFHSQLIEM KRIVSAQCKL TGVNPLSQEM  60
AAGALSIAIG KKPRDLLNPK AVAYMQSVFA IKDKISKKET REISAQFGIT LSQVRDYFAS  120
QRSRVREIVQ SSQEVSRDKS KMLKDLQNGN HENKGSTMHS DPGPFIDAGP VTCDTNIANA  180
VKPEINETAA SSASRPTETD IGTARCDSPE FSLATCIPVT DEDDVTDEPS RSEIATHKST  240
ASTYAEPVPL NVVPPTISET PASNSSGICD ARMQPKLTKG EVLPELDGSD KNFVENIFNL  300
MSKEETFSGQ VNLMEGILKI ESPSVLDWFL SKGGVMILAT WLRQAAVEEQ TSVLHIILKV  360
LCHLPLAKAL PEKMSVILQS VNSLRFYRSQ DISNKARICL ARWSKLFAKS QPMMKLNGVK  420
SQIEVAKLKL LTQSINEING DESRQSELEN TDGSLTSSNQ ANGNLRKRER PLQMEMLTAS  480
PEDSVKRISM GLSSSQGKGR RKVQLVEHIG QRATGSSQQA VRASVSQSRP MSTDDIQKAK  540
LRKEVMEAKY GKKKSEPGSH KPGVPSAIVQ ASRVPTQPVP HERRNSKLPL PKNLTEHKPP  600
VTPHPYQTDE KKQNLLPLEN KDELKQPMVP LQNSTVGLEQ PTASFANNTD EQPMMQAVKS  660
TVEQMQTVVP LLNSNMKSQV LPENIAEQIQ ATVSISRSTA EPQVNSNGSA EKREQIISIS  720
NSIVQKVPRP KKTIPETKEP FWKQCKRVQI PWKTPPEMVI DTEWRVGSGQ NSRELRDQKV  780
RNKREKEFVY QRHEEIPPNP KNPWENEIDY DDTLTPIIPT EQLIDTSDPL QSQNSISVET  840
GNTLQMGSVA HTPAPSSLTG TVSGSEHDPV LLNALLKNPA LVFKLTSGQT ANMTSEDTVR  900
LLDMIKATAG AFPIGNVTHN LSNGSRVSEE RVEGSLPSPT PSSNFGTVRD SGLCCITCK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-116	HB-other family protein

Link Out ? help Back to Top
Phytozome	Kalax.0638s0009.2.p