PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0639s0006.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 272aa    MW: 30765.4 Da    PI: 6.2375
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0639s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00046166188123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ykC+ C k+Fs+   L  H  +H
  Kalax.0639s0006.1.p 166 YKCETCLKTFSSYQALGGHRASH 188
                          9************9999998887 PP
2zf-C2H213.60.00019211233123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++Cp C+++F++   L  H r+H
  Kalax.0639s0006.1.p 211 HQCPVCHRVFPSGQALGGHKRSH 233
                          79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.2E-8326IPR007087Zinc finger, C2H2
PROSITE profilePS501579.162431IPR007087Zinc finger, C2H2
SMARTSM003550.07426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576674.04E-7165233No hitNo description
PROSITE profilePS5015710.325166193IPR007087Zinc finger, C2H2
PfamPF139126.0E-11166190IPR007087Zinc finger, C2H2
SMARTSM003550.12166188IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280168188IPR007087Zinc finger, C2H2
PROSITE profilePS501579.993211238IPR007087Zinc finger, C2H2
PfamPF139127.6E-13211233IPR007087Zinc finger, C2H2
SMARTSM003550.012211233IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280213233IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MERHRCKLCW RRFGSGRALG GHMRSHVMNP SMYSDTQQPD HFDAEEEEEE EVNDGSLVSH  60
QDRESESEAS RRILTRRRSK RLRPASALQS GFGCREKKLK CQVNRGSEPA WSELVEQGSS  120
VSDSSVEDVA FCLMMLSRDK WNNNDPEVEE EEKHEEEELA LAKEKYKCET CLKTFSSYQA  180
LGGHRASHNK IKLVPNPSSL ADPKIPDRRI HQCPVCHRVF PSGQALGGHK RSHALMVPEV  240
IQQERAPIRC GDVVIDLNFP APADEDDVEA F*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17599RRRSKRLRPASALQSGFGCREKKLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278670.14e-58PREDICTED: zinc finger protein ZAT4
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.18e-38C2H2-like zinc finger protein