PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0641s0004.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Trihelix

Protein Properties

Length: 306aa MW: 34257.2 Da PI: 10.0428

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0641s0004.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	56.8	6e-18	23	109	1	83
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 +Wt++e+laLi+ +r+++ +lrrg l+ ++W++v++++ r+ +s+ qC++k+e+l++ry+++k++ + s +++f+ Kalax.0641s0004.1.p 23 CWTHDETLALIDTYRDRWIALRRGYLRTADWDAVASAVaqrcRHVTPPKSSDQCRHKMEKLRQRYRAEKQRCVAFPGRFFSAWVFFK 109 8*******************************99997765666668999****************987665555556666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.2E-18	22	112	No hit	No description
PROSITE profile	PS50090	6.156	24	84	IPR017877	Myb-like domain
SMART	SM00595	5.5E-7	31	119	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MSSASTPALP PPPTTTRKVP LPCWTHDETL ALIDTYRDRW IALRRGYLRT ADWDAVASAV 60 AQRCRHVTPP KSSDQCRHKM EKLRQRYRAE KQRCVAFPGR FFSAWVFFKV LSFLDDGGGS 120 AQTKKRAAEA KAVDPVRQLS SDDGRDDVDD DLHEQISLHK GSFIRPDKAG TAAGYAGRNL 180 VFDVDGGFNL SGGVSGKLHS SMKFVDSKPK ITPNHHQAVG DNGEGVDPLA EMATSIKLLG 240 DGFLKMEKMR MEMAVEFEKA RMEVELKRNE LIMESQRRIV DAFMRAAKRK KTKKELINGM 300 WIVYS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	XP_009789567.1	6e-59	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	4e-31	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Kalax.0641s0004.1.p