PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0642s0002.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 215aa    MW: 24170.1 Da    PI: 9.2357
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0642s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.85e-202478256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                          k+ +f++eq++ Le +F  +++p+  ++++LA++lgL  rqV +WFqNrRa+ k
  Kalax.0642s0002.1.p 24 TKKKKFSDEQIRSLEVMFGLESKPDPCRKQQLAAELGLHPRQVAIWFQNRRARLK 78
                         68899************************************************98 PP
2HD-ZIP_I/II116.61.5e-3725116293
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          kk+++s+eq+++LE +F  e+k +p rK++la eLgl+prqva+WFqnrRAR k kq+E++y++Lk++ydal+ + e+L+ke+++L+++l
  Kalax.0642s0002.1.p  25 KKKKFSDEQIRSLEVMFGLESKPDPCRKQQLAAELGLHPRQVAIWFQNRRARLKPKQIEREYDSLKASYDALACKFESLKKENQSLNSQL 114
                          9***************************************************************************************99 PP

          HD-ZIP_I/II  92 ke 93 
                          ++
  Kalax.0642s0002.1.p 115 RT 116
                          86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.59E-191181IPR009057Homeodomain-like
PROSITE profilePS5007117.7022080IPR001356Homeobox domain
SMARTSM003894.0E-182284IPR001356Homeobox domain
PfamPF000462.0E-172478IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.6E-192687IPR009057Homeodomain-like
CDDcd000861.50E-123181No hitNo description
PRINTSPR000312.2E-65160IPR000047Helix-turn-helix motif
PROSITE patternPS0002705578IPR017970Homeobox, conserved site
PRINTSPR000312.2E-66076IPR000047Helix-turn-helix motif
PfamPF021835.7E-1680120IPR003106Leucine zipper, homeobox-associated
PfamPF036705.5E-583135IPR022788Uncharacterised protein family UPF0184
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MSSNEASVCR SVRSNSSSSN KMKTKKKKFS DEQIRSLEVM FGLESKPDPC RKQQLAAELG  60
LHPRQVAIWF QNRRARLKPK QIEREYDSLK ASYDALACKF ESLKKENQSL NSQLRTLIEK  120
FERVRMDING RMSEQTNASA STEKVGDQQQ GGGSGNNGEQ KLSVVEKLSG SGNIPMEMMY  180
SSPFASSANS WSSEYSCFLD QSTSCGSSQW WEFW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17280RRARLKPKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.19e-31homeobox 7