PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0646s0027.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Nin-like

Protein Properties

Length: 922aa MW: 102121 Da PI: 6.3594

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0646s0027.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.8	5e-29	619	669	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ Kalax.0646s0027.1.p 619 EKTISLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 669 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.439	606	689	IPR003035	RWP-RK domain
Pfam	PF02042	9.6E-25	621	669	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.08E-22	820	909	No hit	No description
Gene3D	G3DSA:3.10.20.240	9.2E-22	821	904	No hit	No description
PROSITE profile	PS51745	20.699	823	906	IPR000270	PB1 domain
SMART	SM00666	2.7E-24	823	906	IPR000270	PB1 domain
Pfam	PF00564	1.1E-15	824	905	IPR000270	PB1 domain
CDD	cd06407	2.14E-40	824	904	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 922 aa Download sequence Send to blast
MILCAEKLVE KEEADTMDGS AFPPCNSAVG SFVSPSMDLD LISELFEGGW LEADNGLGAV 60 GGQHWSFARD GFDQFVDMDL KSFQSDAELM NNGSAYYPVE MERAVKKGSE DWRPMEAMMS 120 SDQLSSGHEL SGRTRIHHHQ STQNSCFSVR DRLMLAIARL TGAARTKDIL VQIWVPIYQQ 180 GKCVLITTDQ PFSLSHNSQS LAYYRDVSEK YQFPAEEGDS MVGMPGRVFL GKMPEWTPDV 240 RFFRKEEYPR VDYAQRYNVQ GSLALPVFER ATGACLGVVE IVTTTQKINY RSELESICKA 300 LEAVDFRSSE SLQLLDVKAC DEKLKAALAE IRDAITYVSE THGLPLAQTW AICSQMGKTG 360 CQHSGKGCSE CISTVNSASY VGDSRFLGFR DECCEHHLLR GQGVVGKAFL TSQPCFEPDV 420 TAYCKTDYPL SHHAILHGLC GAAAVRVRSV YADADFVLEF FLPVNCKDDD EQRRMVASIY 480 AVLQRCLTTF YMVTDNGVKK ESMSLMPSYH RSSDNESPAK RSRHDQSSWV AEMADAQSQK 540 PGKSVAISLE RRSEQAEDKF EMATFWENVK EEPPQDFEII RDDYRFKSFN DTGEDSSSLG 600 ECWPGGSAKA TDRRRTKSEK TISLQVLRQY FAGSLKDAAK SIGVCPTTLK RICRQHGITR 660 WPSRKIKKVS HSLKKLQLVI DSVQGADGSI QISSFYSNFP ELSSPNFSGA TQSSKVINQV 720 QSTEPDGSDQ RNAKTKAGLV SSGDATSSSP SSSSSQNSES SLSFSTGAQH RPNSTLQRVC 780 SDVGLRSPSQ DAPPPKLLER SQSHKLFTDH SILPPLPKRR GGAFRVKASF GEEKVRFGLH 840 PHWALEDLQQ EIARRFGVDD LGHIQIKYLD DDSEWVLLTC TADLEECIDV HLSSQSHTIK 900 LSVNKAPHPH LGSSLGSTCC L*

Sequence ? help Back to Top

Protein Sequence Length: 922 aa Download sequence Send to blast

MILCAEKLVE KEEADTMDGS AFPPCNSAVG SFVSPSMDLD LISELFEGGW LEADNGLGAV  60
GGQHWSFARD GFDQFVDMDL KSFQSDAELM NNGSAYYPVE MERAVKKGSE DWRPMEAMMS  120
SDQLSSGHEL SGRTRIHHHQ STQNSCFSVR DRLMLAIARL TGAARTKDIL VQIWVPIYQQ  180
GKCVLITTDQ PFSLSHNSQS LAYYRDVSEK YQFPAEEGDS MVGMPGRVFL GKMPEWTPDV  240
RFFRKEEYPR VDYAQRYNVQ GSLALPVFER ATGACLGVVE IVTTTQKINY RSELESICKA  300
LEAVDFRSSE SLQLLDVKAC DEKLKAALAE IRDAITYVSE THGLPLAQTW AICSQMGKTG  360
CQHSGKGCSE CISTVNSASY VGDSRFLGFR DECCEHHLLR GQGVVGKAFL TSQPCFEPDV  420
TAYCKTDYPL SHHAILHGLC GAAAVRVRSV YADADFVLEF FLPVNCKDDD EQRRMVASIY  480
AVLQRCLTTF YMVTDNGVKK ESMSLMPSYH RSSDNESPAK RSRHDQSSWV AEMADAQSQK  540
PGKSVAISLE RRSEQAEDKF EMATFWENVK EEPPQDFEII RDDYRFKSFN DTGEDSSSLG  600
ECWPGGSAKA TDRRRTKSEK TISLQVLRQY FAGSLKDAAK SIGVCPTTLK RICRQHGITR  660
WPSRKIKKVS HSLKKLQLVI DSVQGADGSI QISSFYSNFP ELSSPNFSGA TQSSKVINQV  720
QSTEPDGSDQ RNAKTKAGLV SSGDATSSSP SSSSSQNSES SLSFSTGAQH RPNSTLQRVC  780
SDVGLRSPSQ DAPPPKLLER SQSHKLFTDH SILPPLPKRR GGAFRVKASF GEEKVRFGLH  840
PHWALEDLQQ EIARRFGVDD LGHIQIKYLD DDSEWVLLTC TADLEECIDV HLSSQSHTIK  900
LSVNKAPHPH LGSSLGSTCC L*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010645880.1	0.0	PREDICTED: protein NLP2
Refseq	XP_010645886.1	0.0	PREDICTED: protein NLP2
Refseq	XP_010645896.1	0.0	PREDICTED: protein NLP2
TrEMBL	A0A438JSZ8	0.0	A0A438JSZ8_VITVI; Protein NLP2
TrEMBL	F6I0S7	0.0	F6I0S7_VITVI; Uncharacterized protein
STRING	VIT_03s0038g03710.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Kalax.0646s0027.1.p