PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0647s0002.3.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HSF

Protein Properties

Length: 501aa MW: 55385.6 Da PI: 4.6493

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0647s0002.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	114.3	7.8e-36	36	126	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 Fl k+y++++d++++ ++sws+ +nsfvv+++ ef +++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k Kalax.0647s0002.3.p 36 FLCKTYDMVDDPSTDAVVSWSSGNNSFVVWNPPEFGRDLLPKYFKHNNFSSFVRQLNTYGFRKVHPDR---------WEFANEGFLRGQK 116 9**************************************************************999.........********* PP XXXXXXXXXX CS HSF_DNA-bind 92 ellekikrkk 101 +ll++ikr+k Kalax.0647s0002.3.p 117 HLLKTIKRRK 126 ******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	5.71E-36	31	125	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	4.5E-39	32	125	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	3.2E-63	32	125	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	4.2E-32	36	125	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.8E-20	36	59	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.8E-20	74	86	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	75	99	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	9.8E-20	87	99	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence Send to blast
MSSSAERGIS GTCSTDSTQS VPVPVPMPNP NAPPPFLCKT YDMVDDPSTD AVVSWSSGNN 60 SFVVWNPPEF GRDLLPKYFK HNNFSSFVRQ LNTYGFRKVH PDRWEFANEG FLRGQKHLLK 120 TIKRRKAFHG PVQSQLEQSQ VQSPAASPCV EVGKFGLEEE VEMLKRDKNV LMQELVKLRQ 180 QQQSTDKQLQ VTMDRLQGME QRQQQLMSFL AKAVQSPGFL TQFVQQQAQN NRRISEANKK 240 RRLKQDDDSM GDPSSNPGGQ IVKYQPFLNE ASTAFLRQLM EVDSSSQLEF RNNHQDNFFF 300 GDASSSSDGQ HGGSSMDRAS KPPLLEVLAS SPQFCSPPAS MAPACGSSAD SVDLQNSSIG 360 ASSEVGTMIH HQPISSGKQD ISRDMRYEAV PLVPDMVPES FAENPEDDSI QFDASTFGLD 420 TELPFNIESI SPGHGTTDMS AYDDVWKMLS EEIDSAQLGG MANESEMLLM DDDLDSSQNI 480 DHLTDQMGLL SSGAKKKDNI *

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence Send to blast

MSSSAERGIS GTCSTDSTQS VPVPVPMPNP NAPPPFLCKT YDMVDDPSTD AVVSWSSGNN  60
SFVVWNPPEF GRDLLPKYFK HNNFSSFVRQ LNTYGFRKVH PDRWEFANEG FLRGQKHLLK  120
TIKRRKAFHG PVQSQLEQSQ VQSPAASPCV EVGKFGLEEE VEMLKRDKNV LMQELVKLRQ  180
QQQSTDKQLQ VTMDRLQGME QRQQQLMSFL AKAVQSPGFL TQFVQQQAQN NRRISEANKK  240
RRLKQDDDSM GDPSSNPGGQ IVKYQPFLNE ASTAFLRQLM EVDSSSQLEF RNNHQDNFFF  300
GDASSSSDGQ HGGSSMDRAS KPPLLEVLAS SPQFCSPPAS MAPACGSSAD SVDLQNSSIG  360
ASSEVGTMIH HQPISSGKQD ISRDMRYEAV PLVPDMVPES FAENPEDDSI QFDASTFGLD  420
TELPFNIESI SPGHGTTDMS AYDDVWKMLS EEIDSAQLGG MANESEMLLM DDDLDSSQNI  480
DHLTDQMGLL SSGAKKKDNI *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	3e-27	27	125	11	120	Heat shock factor protein 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	118	124	LKTIKRR
2	237	244	NKKRRLKQ
3	238	243	KKRRLK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011018512.1	1e-168	PREDICTED: heat stress transcription factor A-1d isoform X1
Swissprot	Q84T61	1e-134	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A445GG78	1e-164	A0A445GG78_GLYSO; Heat shock factor protein HSF8
TrEMBL	I1MMC1	1e-164	I1MMC1_SOYBN; Uncharacterized protein
TrEMBL	Q564C8	1e-164	Q564C8_SOYBN; Heat shock factor protein hsf8-related
STRING	GLYMA16G13400.1	1e-165	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32330.1	1e-112	heat shock transcription factor A1D

Link Out ? help Back to Top
Phytozome	Kalax.0647s0002.3.p

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]