PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0647s0007.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 877aa    MW: 96927.7 Da    PI: 5.9099
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0647s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.19.9e-21143198156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++ +++t++q++e+e++F+++++p+ ++r +L+++lgL+ rq+k+WFqNrR+++k
  Kalax.0647s0007.1.p 143 KKRYHRHTAHQIQEMEAVFKECPHPDDKQRMRLSQELGLKPRQIKFWFQNRRTQMK 198
                          688999***********************************************998 PP
2START144.21.2e-453445752206
                          HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS...................SCEEEEEEEECCSCHHHHHHHHHCCCG CS
                START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv..................dsgealrasgvvdmvlallveellddk 69 
                          la + ++elvk+  +++p+W +      e +n  e+                            ++ea r+s vv+m++ +lv  ++d  
  Kalax.0647s0007.1.p 344 LAMSSMDELVKMCRVGQPLWCQCKetgrEVLNVHEYAN------MfpwtindrngvkqnlgelTRTEATRESSVVIMNSITLVDAFMDCT 427
                          677899******************55555555555555......444445599999******9*************************** PP

                          GCT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EE CS
                START  70 eqWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRael 147
                           +W   +     +a t++vi+sg      g lqlm ae+ +lsplvp R+++f+Ry++q  ++g+wv+vd  +d+ q+  +s+++   ++
  Kalax.0647s0007.1.p 428 -KWVDLFSsiiaRARTIQVITSGvsghanGSLQLMHAEYLFLSPLVPtRESYFLRYCQQnVEEGTWVVVDFPTDNFQNSFQSAHLPAYKR 516
                          .99888888888***********************************************99*****************98899999999* PP

                          SSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 148 lpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          +pSg++i++++ng+s+vtwveh + +++ +h++++ +v++gla+ga +w+  lqrqce+
  Kalax.0647s0007.1.p 517 RPSGCIIQDMPNGYSRVTWVEHCEIEDKPVHQIFNNIVSNGLAFGAERWLNVLQRQCER 575
                          *********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.99E-20130200IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-21136206IPR009057Homeodomain-like
PROSITE profilePS5007117.151140200IPR001356Homeobox domain
SMARTSM003893.2E-20141204IPR001356Homeobox domain
PfamPF000463.0E-18143198IPR001356Homeobox domain
CDDcd000861.52E-19143201No hitNo description
PROSITE patternPS000270175198IPR017970Homeobox, conserved site
PROSITE profilePS5084841.511334578IPR002913START domain
SuperFamilySSF559611.51E-27335577No hitNo description
CDDcd088756.85E-109338574No hitNo description
SMARTSM002341.8E-29343575IPR002913START domain
PfamPF018523.5E-37344575IPR002913START domain
SuperFamilySSF559615.36E-20611771No hitNo description
SuperFamilySSF559615.36E-20801839No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 877 aa     Download sequence    Send to blast
MYGDCQVVLS SMGMNNNNAG SSSSSSNLNL TSMNMNMGMG MGMFSSDSAA ANYFSSPPSN  60
NIQSGSSFNF MSPSTLLMPP LPFHSSYPPL NILTPKEESD QLKGKLDEME SGSGSDQIEA  120
LSANDALDTN NNTDQNQQPQ PKKKRYHRHT AHQIQEMEAV FKECPHPDDK QRMRLSQELG  180
LKPRQIKFWF QNRRTQMKAQ HDRQDNVMLR QENENLMNEN YRLQAALRNI VCPSCGGPAM  240
LGEVGFDEQQ LRIENARLKE ELERVCNLAS NYSGRPVQAI GPPPSILAPS LDLEMGMYPR  300
HFQEPTMGNC SSMIMPQHLL PENNLHFNEG FMIMEEEKQL ALELAMSSMD ELVKMCRVGQ  360
PLWCQCKETG REVLNVHEYA NMFPWTINDR NGVKQNLGEL TRTEATRESS VVIMNSITLV  420
DAFMDCTKWV DLFSSIIARA RTIQVITSGV SGHANGSLQL MHAEYLFLSP LVPTRESYFL  480
RYCQQNVEEG TWVVVDFPTD NFQNSFQSAH LPAYKRRPSG CIIQDMPNGY SRVTWVEHCE  540
IEDKPVHQIF NNIVSNGLAF GAERWLNVLQ RQCERLASLM ARNIPDLGVI PSPEARKNLM  600
KLAYRMIRTF CFNISTSNGQ SWTALSDSSD DTIRITTRKV MEPGQPNGVI LSAVSTTWLP  660
HSHFQVFDLL RDEHKRAQID VLSNGNSLHE VTHIANGSHP GNCISLLRIN VASNSSQNVE  720
LMLQESCIDQ SGCLIVHANV DVDSIQLAMS SEDPSRIPLL PIGFVITPVD PTLSRTSPSA  780
HANKDANPAN SPNPETKSNP GGCLLTVGLQ VLASSLPSVK LSLSSITAIN NHLCNMVHQI  840
GLALGAGTVS NDAPLAVAST SGEAAAGETK VTADQA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028083900.10.0homeobox-leucine zipper protein ROC3
RefseqXP_028083901.10.0homeobox-leucine zipper protein ROC3
RefseqXP_028083902.10.0homeobox-leucine zipper protein ROC3
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLA0A2R6PND80.0A0A2R6PND8_ACTCH; Homeobox-leucine zipper protein
STRINGVIT_02s0012g02030.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7