PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0647s0007.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HD-ZIP

Protein Properties

Length: 876aa MW: 96799.5 Da PI: 5.8255

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0647s0007.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.1	9.9e-21	142	197	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F+++++p+ ++r +L+++lgL+ rq+k+WFqNrR+++k Kalax.0647s0007.2.p 142 KKRYHRHTAHQIQEMEAVFKECPHPDDKQRMRLSQELGLKPRQIKFWFQNRRTQMK 197 688999***********************************************998 PP
2	START	144.2	1.2e-45	343	574	2	206
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS...................SCEEEEEEEECCSCHHHHHHHHHCCCG CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv..................dsgealrasgvvdmvlallveellddk 69 la + ++elvk+ +++p+W + e +n e+ ++ea r+s vv+m++ +lv ++d Kalax.0647s0007.2.p 343 LAMSSMDELVKMCRVGQPLWCQCKetgrEVLNVHEYAN------MfpwtindrngvkqnlgelTRTEATRESSVVIMNSITLVDAFMDCT 426 677899****************55555555555555......444445599999**9*********************** PP GCT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EE CS START 70 eqWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRael 147 +W + +a t++vi+sg g lqlm ae+ +lsplvp R+++f+Ry++q ++g+wv+vd +d+ q+ +s+++ ++ Kalax.0647s0007.2.p 427 -KWVDLFSsiiaRARTIQVITSGvsghanGSLQLMHAEYLFLSPLVPtRESYFLRYCQQnVEEGTWVVVDFPTDNFQNSFQSAHLPAYKR 515 .99888888888*******************************************99**************98899999999 PP SSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 148 lpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +pSg++i++++ng+s+vtwveh + +++ +h++++ +v++gla+ga +w+ lqrqce+ Kalax.0647s0007.2.p 516 RPSGCIIQDMPNGYSRVTWVEHCEIEDKPVHQIFNNIVSNGLAFGAERWLNVLQRQCER 574 *********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.99E-20	129	199	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-21	135	205	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.151	139	199	IPR001356	Homeobox domain
SMART	SM00389	3.2E-20	140	203	IPR001356	Homeobox domain
CDD	cd00086	1.48E-19	142	200	No hit	No description
Pfam	PF00046	3.0E-18	142	197	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	174	197	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	41.511	333	577	IPR002913	START domain
SuperFamily	SSF55961	1.51E-27	334	576	No hit	No description
CDD	cd08875	7.61E-109	337	573	No hit	No description
SMART	SM00234	1.8E-29	342	574	IPR002913	START domain
Pfam	PF01852	3.5E-37	343	574	IPR002913	START domain
SuperFamily	SSF55961	5.36E-20	610	770	No hit	No description
SuperFamily	SSF55961	5.36E-20	800	838	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 876 aa Download sequence Send to blast
MYGDCQVVLS SMGMNNNNAG SSSSSSNLNL TSMNMNMGMG MGMFSSDSAA ANYFSSPPSN 60 NIQSGSSFNF MSPSTLLMPP LPFHSSYPPL NILTPEESDQ LKGKLDEMES GSGSDQIEAL 120 SANDALDTNN NTDQNQQPQP KKKRYHRHTA HQIQEMEAVF KECPHPDDKQ RMRLSQELGL 180 KPRQIKFWFQ NRRTQMKAQH DRQDNVMLRQ ENENLMNENY RLQAALRNIV CPSCGGPAML 240 GEVGFDEQQL RIENARLKEE LERVCNLASN YSGRPVQAIG PPPSILAPSL DLEMGMYPRH 300 FQEPTMGNCS SMIMPQHLLP ENNLHFNEGF MIMEEEKQLA LELAMSSMDE LVKMCRVGQP 360 LWCQCKETGR EVLNVHEYAN MFPWTINDRN GVKQNLGELT RTEATRESSV VIMNSITLVD 420 AFMDCTKWVD LFSSIIARAR TIQVITSGVS GHANGSLQLM HAEYLFLSPL VPTRESYFLR 480 YCQQNVEEGT WVVVDFPTDN FQNSFQSAHL PAYKRRPSGC IIQDMPNGYS RVTWVEHCEI 540 EDKPVHQIFN NIVSNGLAFG AERWLNVLQR QCERLASLMA RNIPDLGVIP SPEARKNLMK 600 LAYRMIRTFC FNISTSNGQS WTALSDSSDD TIRITTRKVM EPGQPNGVIL SAVSTTWLPH 660 SHFQVFDLLR DEHKRAQIDV LSNGNSLHEV THIANGSHPG NCISLLRINV ASNSSQNVEL 720 MLQESCIDQS GCLIVHANVD VDSIQLAMSS EDPSRIPLLP IGFVITPVDP TLSRTSPSAH 780 ANKDANPANS PNPETKSNPG GCLLTVGLQV LASSLPSVKL SLSSITAINN HLCNMVHQIG 840 LALGAGTVSN DAPLAVASTS GEAAAGETKV TADQA*

Sequence ? help Back to Top

Protein Sequence Length: 876 aa Download sequence Send to blast

MYGDCQVVLS SMGMNNNNAG SSSSSSNLNL TSMNMNMGMG MGMFSSDSAA ANYFSSPPSN  60
NIQSGSSFNF MSPSTLLMPP LPFHSSYPPL NILTPEESDQ LKGKLDEMES GSGSDQIEAL  120
SANDALDTNN NTDQNQQPQP KKKRYHRHTA HQIQEMEAVF KECPHPDDKQ RMRLSQELGL  180
KPRQIKFWFQ NRRTQMKAQH DRQDNVMLRQ ENENLMNENY RLQAALRNIV CPSCGGPAML  240
GEVGFDEQQL RIENARLKEE LERVCNLASN YSGRPVQAIG PPPSILAPSL DLEMGMYPRH  300
FQEPTMGNCS SMIMPQHLLP ENNLHFNEGF MIMEEEKQLA LELAMSSMDE LVKMCRVGQP  360
LWCQCKETGR EVLNVHEYAN MFPWTINDRN GVKQNLGELT RTEATRESSV VIMNSITLVD  420
AFMDCTKWVD LFSSIIARAR TIQVITSGVS GHANGSLQLM HAEYLFLSPL VPTRESYFLR  480
YCQQNVEEGT WVVVDFPTDN FQNSFQSAHL PAYKRRPSGC IIQDMPNGYS RVTWVEHCEI  540
EDKPVHQIFN NIVSNGLAFG AERWLNVLQR QCERLASLMA RNIPDLGVIP SPEARKNLMK  600
LAYRMIRTFC FNISTSNGQS WTALSDSSDD TIRITTRKVM EPGQPNGVIL SAVSTTWLPH  660
SHFQVFDLLR DEHKRAQIDV LSNGNSLHEV THIANGSHPG NCISLLRINV ASNSSQNVEL  720
MLQESCIDQS GCLIVHANVD VDSIQLAMSS EDPSRIPLLP IGFVITPVDP TLSRTSPSAH  780
ANKDANPANS PNPETKSNPG GCLLTVGLQV LASSLPSVKL SLSSITAINN HLCNMVHQIG  840
LALGAGTVSN DAPLAVASTS GEAAAGETKV TADQA*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028083900.1	0.0	homeobox-leucine zipper protein ROC3
Refseq	XP_028083901.1	0.0	homeobox-leucine zipper protein ROC3
Refseq	XP_028083902.1	0.0	homeobox-leucine zipper protein ROC3
Swissprot	Q336P2	0.0	ROC3_ORYSJ; Homeobox-leucine zipper protein ROC3
TrEMBL	A0A2R6PND8	0.0	A0A2R6PND8_ACTCH; Homeobox-leucine zipper protein
STRING	VIT_02s0012g02030.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46880.1	0.0	homeobox-7

Link Out ? help Back to Top
Phytozome	Kalax.0647s0007.2.p

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]