PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0651s0003.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C2H2

Protein Properties

Length: 260aa MW: 28083.4 Da PI: 9.768

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0651s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.0001	70	92	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H+++H Kalax.0651s0003.1.p 70 YVCSFCKREFRSAQALGGHMNVH 92 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.39E-6	67	96	No hit	No description
PROSITE profile	PS50157	11.094	70	97	IPR007087	Zinc finger, C2H2
Pfam	PF13912	7.4E-7	70	93	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0047	70	92	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	72	92	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MDNKIGIPLT NINNRSKEYN EESAVGANTN KKGHMKGPWN HFYTSSVYAS EEGHMGLGVS 60 HGLSWPPRLY VCSFCKREFR SAQALGGHMN VHRRDRARLR QSPPSPPMEQ VAGNCPSATT 120 ASADSINLNL TPNPNPSLIY SSTWMIQKPN IKTASFITGS PTIPARKPSA PYLISSSSSG 180 APASRIKRWS GAPTNPFTTS TTTTTPNLFN ANNDEDQKII SEVSLNRACE KGGLLRLGFG 240 NGGLSNEDVD LELRLGYSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	2e-12	65	92	2	29	superman protein
2l1o_A	2e-12	65	92	2	29	Transcriptional regulator SUPERMAN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23130.1	6e-21	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Kalax.0651s0003.1.p