PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0656s0002.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 237aa    MW: 26073.3 Da    PI: 9.0753
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0656s0002.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.63.4e-11155202455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    +k   Ka+iL + ++Y++sLq
  Kalax.0656s0002.2.p 155 SHSLAERVRREKIGERMKLLQSLVPGC----DKIAGKAQILDEIINYVQSLQ 202
                          8*************************9....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-16149217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.87E-10149206No hitNo description
Gene3DG3DSA:4.10.280.102.3E-16151214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.44151201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-8155202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-10157207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MSGFSYHHDH SDSSSLQSNN NFVHVPTPFQ QDDTVLWRHS NNECFQDYFP FHQFQSKEAN  60
YGLSAAAAAR HDAEVPSSAI VCGLRASYIA GPNAEMGVAQ TPKRRKNINS KKIPPKQNNE  120
KKSKGGQKEK EQVSGTPPVM EYIHVRARRG QATDSHSLAE RVRREKIGER MKLLQSLVPG  180
CDKIAGKAQI LDEIINYVQS LQTQVQVLVG KMAVLSPYMS DNEANLGAAL PASAEV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010536589.12e-41PREDICTED: transcription factor bHLH137 isoform X1
RefseqXP_010536590.12e-41PREDICTED: transcription factor bHLH137 isoform X2
RefseqXP_010536591.12e-41PREDICTED: transcription factor bHLH137 isoform X1
SwissprotQ93W881e-40BH137_ARATH; Transcription factor bHLH137
TrEMBLA0A3S3N2E56e-40A0A3S3N2E5_9MAGN; Transcription factor bHLH137
STRINGXP_010536590.18e-41(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.28e-32bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]