PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0659s0006.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NF-X1
Protein Properties Length: 1118aa    MW: 120810 Da    PI: 8.0791
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0659s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X121.74.4e-07379396118
             zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                          CG+H C ++CH+GpCp+C
  Kalax.0659s0006.1.p 379 CGNHFCTEICHPGPCPEC 396
                          ****************** PP
2zf-NF-X121.93.8e-07533551119
             zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                          CGkH+C++lCH G C pC 
  Kalax.0659s0006.1.p 533 CGKHSCEALCHSGYCAPCL 551
                          ******************6 PP
3zf-NF-X116.91.4e-05643658116
             zf-NF-X1   1 CGkHkCqklCHeGpCp 16 
                          CG+H C ++CH+  C+
  Kalax.0659s0006.1.p 643 CGMHACTRTCHPSSCD 658
                          ***************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.91E-6138207No hitNo description
PROSITE profilePS500168.911145206IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590148203IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.568148204IPR001841Zinc finger, RING-type
SMARTSM004380.023260278IPR000967Zinc finger, NF-X1-type
PfamPF014228.4262277IPR000967Zinc finger, NF-X1-type
CDDcd060084.24E-10305353No hitNo description
SMARTSM004380.018315334IPR000967Zinc finger, NF-X1-type
PfamPF014220.0016317332IPR000967Zinc finger, NF-X1-type
CDDcd060085.77E-9369411No hitNo description
SMARTSM004381.6E-5379398IPR000967Zinc finger, NF-X1-type
PfamPF014224.8E-5379396IPR000967Zinc finger, NF-X1-type
CDDcd060082.92E-13427475No hitNo description
SMARTSM004380.028437456IPR000967Zinc finger, NF-X1-type
PfamPF014220.0012437454IPR000967Zinc finger, NF-X1-type
SMARTSM00438130495525IPR000967Zinc finger, NF-X1-type
PfamPF0142218495506IPR000967Zinc finger, NF-X1-type
CDDcd060081.67E-8523566No hitNo description
SMARTSM004382.3E-4533552IPR000967Zinc finger, NF-X1-type
PfamPF014222.1E-5533550IPR000967Zinc finger, NF-X1-type
CDDcd060083.23E-5580628No hitNo description
SMARTSM004380.092590608IPR000967Zinc finger, NF-X1-type
PfamPF014227.4590607IPR000967Zinc finger, NF-X1-type
SMARTSM004380.039643673IPR000967Zinc finger, NF-X1-type
PfamPF014220.0014643658IPR000967Zinc finger, NF-X1-type
CDDcd060085.92E-5671720No hitNo description
PfamPF0142289675701IPR000967Zinc finger, NF-X1-type
SMARTSM004380.11682703IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3305.0E-5927985IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1118 aa     Download sequence    Send to blast
MTSQVRNDRK RYPTQSSRHQ QWIPVGSVTN TVVNTTQLSA APVIANPPQA SAPPVVLDNT  60
STSGSSSGIN VGDPSYSSTQ LSDNRSRGQF ATRGSKGRPF NQRRDKGRGR ERETGDGART  120
ETEEVKDASL PQLVQELQEK LAKGSVECMI CYDMVRRSAP IWSCSSCYSI FHLNCIRKWA  180
RAPTSVDLIA EKNQGVNWRC PGCQSVQLST PKEIRYECFC RKRVDPPSDL YLTPHSCGES  240
CGKPLEKEAP VAGNSKDYLC PHVCVLQCHP GPCPPCKAFA PPCSCPCGKK IITTRCSDRK  300
SVLTCGQRCN KLLDCWRHRC EKVCHVGSCD PCDSMIAASC FCKKKVEVLR CGEMSVKGVV  360
KEEDGVFSCT DACGKKLGCG NHFCTEICHP GPCPECDLVP SIIKTCCCGK TNLVERRESC  420
MDPVPICEKV CEKQLPCGVH LCKEKCHTGN CSPCMTLVTQ KCRCGSTSRT VECHKTINAE  480
EIFTCDKPCG RKKNCGRHRC SERCCPLSSS SSTHIADWDP HFCSMICGKK LRCGKHSCEA  540
LCHSGYCAPC LETIFTDLTC ACGRTSLPPP LPCGTPPPSC QLPCSVPQPC GHPSSHSCHF  600
GDCPPCSVPV SKECVGSHVI LRNIPCGSKD IRCNKLCGKT RRCGMHACTR TCHPSSCDAP  660
SESNTSSKAS CGQTCGAPRR DCRHTCTAPC HPLASCPDVR CSFPVTITCS CGRITANVPC  720
DAGGSPSGFT GDSLYEASIL QKLPAPLQPV ESNGRKIPLG QRKLTCDDEC AKLERKRVLA  780
DAFDITPPNL DGLHLGENAT LSELLSDLFR RDAKWVMYVE ERCKFLVLGK SRGVASNIKV  840
HVFCPMPKEK RDALRVIAER WKLAINTAGW EPKRFVVVHV TSRSKAPART LGLKGSVSSS  900
IVHPPVFDPS IDMDPRLVVS LLDLPRDADI SALVLRFGGE CELVWLNDKN ALAVFHDPAR  960
AATAMRRLDH GSVYHGAVTI QSVSASAASP GANPWGGGPK LNLWKDTLEE PGWGEGSWGG  1020
ADGSSSKASV VKSAWQKNNG DPIPASINRW SVLGSEVGQS SSVASVDVVD NRKQSASVST  1080
SAMEPQPNLS MPAGHHGGEP SGADATEVVD DWEKAYE*
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019081933.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLF6GSQ10.0F6GSQ1_VITVI; Uncharacterized protein
STRINGVIT_17s0000g01920.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1