PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0660s0026.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

LBD

Protein Properties

Length: 205aa MW: 21613.5 Da PI: 8.7558

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0660s0026.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	114.4	7.6e-36	1	96	5	100
DUF260 5 CkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 Ck+lrr+Ca++C+++pyf +p+kf +vh++FGasnv+kll ++pe r da++slvyeA++r+rdPvyG++g i +lqqql +l+a+l Kalax.0660s0026.1.p 1 CKLLRRRCAEECPFSPYFSPLEPHKFLAVHRVFGASNVSKLLLEAPEGLRADAANSLVYEANVRIRDPVYGCMGAIAALQQQLLSLQAQL 90 ****************************************************************************************** PP DUF260 95 allkee 100 +++++e Kalax.0660s0026.1.p 91 DAVRAE 96 *99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	1.2E-35	1	94	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	22.441	1	97	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
CKLLRRRCAE ECPFSPYFSP LEPHKFLAVH RVFGASNVSK LLLEAPEGLR ADAANSLVYE 60 ANVRIRDPVY GCMGAIAALQ QQLLSLQAQL DAVRAEILKQ DVKISQAAAA SSAPSISSKN 120 STIALAAISN NNISIQTATT HHHQAVAMPM PPPPSPSEQP RRPLTPPLHS ASAQSGSSNS 180 SALSTSSTAV TTSSLYSTQQ PNNC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-36	1	99	15	113	LOB family transfactor Ramosa2.1
5ly0_B	2e-36	1	99	15	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003544924.1	3e-58	LOB domain-containing protein 13 isoform X1
Refseq	XP_006596459.1	2e-58	LOB domain-containing protein 13 isoform X2
Refseq	XP_028199297.1	3e-58	LOB domain-containing protein 13-like isoform X1
Refseq	XP_028199298.1	2e-58	LOB domain-containing protein 13-like isoform X2
Swissprot	Q9AT61	1e-52	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A0B2PI30	7e-57	A0A0B2PI30_GLYSO; LOB domain-containing protein 13
TrEMBL	I1MBJ6	5e-57	I1MBJ6_SOYBN; Uncharacterized protein
TrEMBL	K7M865	7e-57	K7M865_SOYBN; Uncharacterized protein
STRING	GLYMA14G38280.2	1e-57	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	1e-45	LOB domain-containing protein 15

Link Out ? help Back to Top
Phytozome	Kalax.0660s0026.1.p

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]