PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0664s0006.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 400aa    MW: 43667.8 Da    PI: 8.2991
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0664s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.88.4e-08331373754
                          HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          ++ r+RR+ri +++  L++l+P         K++ a++L +A +Y+k L
  Kalax.0664s0006.1.p 331 AAARQRRERISERIRVLQRLVPGgH------KMDTATMLDEAANYLKFL 373
                          567*******************955......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.837324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-13330382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-12330379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-5332373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-11333382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MKRTFMEQIG WNVSQPIVAD QNNASSCSSA WRNQQQQAAA EGVSNSYHNN GSLMYATRMT  60
ASIVDLRDFD DVTTTNGNKE LDSRVGKQCA YPGLIYRLAD KHQEAETVSQ LHQNSSSSGT  120
RRVSDYILTT NTTPLMNTCS YLSANDSANN TNLLGTDGAG ISSVDALLMP SSAVSSRKRK  180
AAVGEDAQFY SYNGRLHAAV GRANIPTEFN KLDDNENPRK RTSGEKEELT TIYDHSSSGA  240
EAVGGLSQLM IPANKLAQPQ TDCQQSMMPK SGNISFQLGA MLSPEKDAGI AEMKELVYMA  300
AAFRPVNLGV EEAVEKPTRK NVRISSDPQT AAARQRRERI SERIRVLQRL VPGGHKMDTA  360
TMLDEAANYL KFLRSQVKAL EKTATFGFSS NNFLTSTHL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1333338RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.18e-37bHLH family protein