PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0665s0005.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Nin-like

Protein Properties

Length: 969aa MW: 106647 Da PI: 5.8155

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0665s0005.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.8	1.1e-28	623	673	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i l +l++yFs+++kdAA++Lgvc+T+LKriCRq+GI+RWP+Rkik++ Kalax.0665s0005.1.p 623 EKTIGLPVLQQYFSGSLKDAARSLGVCPTTLKRICRQHGISRWPSRKIKKV 673 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.029	612	693	IPR003035	RWP-RK domain
Pfam	PF02042	1.6E-25	626	673	IPR003035	RWP-RK domain
SuperFamily	SSF54277	9.32E-22	865	954	No hit	No description
Gene3D	G3DSA:3.10.20.240	4.0E-22	868	950	No hit	No description
PROSITE profile	PS51745	19.88	870	953	IPR000270	PB1 domain
SMART	SM00666	2.0E-21	870	953	IPR000270	PB1 domain
Pfam	PF00564	8.5E-17	871	950	IPR000270	PB1 domain
CDD	cd06407	8.05E-40	871	950	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 969 aa Download sequence Send to blast
MDDDALSPNT ILPATSIDSD FINELLLDGC WVETTDGDEY SSLLSPPMTS APLANSLSNL 60 PDFEAPSSGA NSIPDKDARE EPTETSKAPR KRPLRYSQVE DPARAKTQDW GAIQKSTSSG 120 KSESYLVDIS EPNKRIWIGP KTNVGTSPSV GDRLMSAIRY LSESTRDRNI LIQIWVPVKS 180 GNKHVLTTNH QPYTIDPNSL SLAQYRNVSE NYQFPAEENS RQSAGLPGRV FLRKMPEWTP 240 DVRCFRQEEY PRIAFAQQLN VQGSLALPVF EQGSGSCLGV VEIVTTCQKI NYRPELETVC 300 RALEAFQLRS SEITGIQNSK ILNDSYIAAS PQISEFLTYT CKAHNLPLAQ TWAPCIQHSN 360 SVGENTTQCM STVDAAYYVG DQKFIGFHEE CCEQHLLGDQ GIVGKAFTTK QLCFAPDITT 420 YSKTDYPLSH HAILFGLCAA IAVRVRSIFT GTADFVLEFF LPVSCKSFED QQRMIGSLWD 480 ILQGCQSLYV VTENDLQEES LALLETAHGN FNENATSKSD ANPLKKASQE DSSWIANMMG 540 AQNKGKGVSI LLDASKEEPH EEFKMTTPWD NAEDESQPVF EDFDLQQQGP KKAEDGGGVS 600 PTFGGNLPSG SRKSGEKIRT KTEKTIGLPV LQQYFSGSLK DAARSLGVCP TTLKRICRQH 660 GISRWPSRKI KKVGHSLKKL QLVMDSVQGP DGSIQISSFY SKFPELGSPN VSGTSSHSVA 720 KQSDRHNQLN RQHEEASLNP LSIRRISDDS VHVNPQIETG LLSPLGTTSK SPSSSCSQKS 780 TSSLCYSTGA KQDPLMSNTL GSTDALFGES SENAIKQSCS DAELLQLSIQ HETRLLGRSQ 840 SHKSLTEQPP LEMLPPLPKS TGRVLRDNGA FRLKVTFGEV KVRFSLQRTW VFADLQQEIA 900 KRFNIDDMGK LHLKYLDDDS EWVLLTCDAD LEECLDLHKA AQSQTVKLCV LHAPHTNLGT 960 SFGSSGLS*

Sequence ? help Back to Top

Protein Sequence Length: 969 aa Download sequence Send to blast

MDDDALSPNT ILPATSIDSD FINELLLDGC WVETTDGDEY SSLLSPPMTS APLANSLSNL  60
PDFEAPSSGA NSIPDKDARE EPTETSKAPR KRPLRYSQVE DPARAKTQDW GAIQKSTSSG  120
KSESYLVDIS EPNKRIWIGP KTNVGTSPSV GDRLMSAIRY LSESTRDRNI LIQIWVPVKS  180
GNKHVLTTNH QPYTIDPNSL SLAQYRNVSE NYQFPAEENS RQSAGLPGRV FLRKMPEWTP  240
DVRCFRQEEY PRIAFAQQLN VQGSLALPVF EQGSGSCLGV VEIVTTCQKI NYRPELETVC  300
RALEAFQLRS SEITGIQNSK ILNDSYIAAS PQISEFLTYT CKAHNLPLAQ TWAPCIQHSN  360
SVGENTTQCM STVDAAYYVG DQKFIGFHEE CCEQHLLGDQ GIVGKAFTTK QLCFAPDITT  420
YSKTDYPLSH HAILFGLCAA IAVRVRSIFT GTADFVLEFF LPVSCKSFED QQRMIGSLWD  480
ILQGCQSLYV VTENDLQEES LALLETAHGN FNENATSKSD ANPLKKASQE DSSWIANMMG  540
AQNKGKGVSI LLDASKEEPH EEFKMTTPWD NAEDESQPVF EDFDLQQQGP KKAEDGGGVS  600
PTFGGNLPSG SRKSGEKIRT KTEKTIGLPV LQQYFSGSLK DAARSLGVCP TTLKRICRQH  660
GISRWPSRKI KKVGHSLKKL QLVMDSVQGP DGSIQISSFY SKFPELGSPN VSGTSSHSVA  720
KQSDRHNQLN RQHEEASLNP LSIRRISDDS VHVNPQIETG LLSPLGTTSK SPSSSCSQKS  780
TSSLCYSTGA KQDPLMSNTL GSTDALFGES SENAIKQSCS DAELLQLSIQ HETRLLGRSQ  840
SHKSLTEQPP LEMLPPLPKS TGRVLRDNGA FRLKVTFGEV KVRFSLQRTW VFADLQQEIA  900
KRFNIDDMGK LHLKYLDDDS EWVLLTCDAD LEECLDLHKA AQSQTVKLCV LHAPHTNLGT  960
SFGSSGLS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010645880.1	0.0	PREDICTED: protein NLP2
Refseq	XP_010645886.1	0.0	PREDICTED: protein NLP2
Refseq	XP_010645896.1	0.0	PREDICTED: protein NLP2
TrEMBL	A0A438JSZ8	0.0	A0A438JSZ8_VITVI; Protein NLP2
TrEMBL	F6I0S7	0.0	F6I0S7_VITVI; Uncharacterized protein
STRING	VIT_03s0038g03710.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17150.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Kalax.0665s0005.1.p