PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0669s0015.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HSF
Protein Properties Length: 448aa    MW: 50527.5 Da    PI: 4.8717
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0669s0015.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1118.3e-35141052102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          F+ k+ye+++d++ ++++sws+n++sf+v+d+ efak +Lp++Fkh+nf+SF+RQLn+YgF+kv+ e+         weF+++ F +g+ 
  Kalax.0669s0015.1.p  14 FVAKTYEMVDDPTSNTIVSWSSNNTSFIVWDPPEFAKALLPTFFKHNNFSSFIRQLNTYGFRKVDPEQ---------WEFANDDFLRGQP 94 
                          9***************************************************************9998.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          + +++i+r+k 
  Kalax.0669s0015.1.p  95 HRMKNIHRRKP 105
                          ********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.63E-3410103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.7E-6010103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.1E-3711103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.4E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-181437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-185264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-186577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MDESLGDSNA LPPFVAKTYE MVDDPTSNTI VSWSSNNTSF IVWDPPEFAK ALLPTFFKHN  60
NFSSFIRQLN TYGFRKVDPE QWEFANDDFL RGQPHRMKNI HRRKPVHSHS VHNQGHGISS  120
PLTESERHGY KGDIERLKRE KEVLQLELEE KKGGREEFEL HAQSLKQQLE CIIQRQEKLM  180
SFLAQVLNKP GLVLSLTPSI TSHERKRRLL TTDCLQGEAE IDRNRLRNSQ VIDMEEAVSA  240
AMSSLITEPI DLMESSVAHW EEIIHQMAQT CAEDIYNIQT PPLAVILTEI DPPLEQAVTN  300
SENRFYPMAN SKENSLTFEL DESQGCADSL ALSFLQPNID VPLTSTGTDM NHVLSVQAVE  360
VVQPTEKASE SVNGARTTTI VPTGANDTFW EQFFTEHPGS SNVQDAQFEK KGSDTKKQSD  420
PSKLLWNIPS VNNLVEQMSH LTPAERT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-22110312129Heat shock factor protein 1
5d5v_B4e-22110312129Heat shock factor protein 1
5d5v_D4e-22110312129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203208ERKRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010655551.11e-144PREDICTED: heat stress transcription factor A-4a
RefseqXP_010655552.11e-144PREDICTED: heat stress transcription factor A-4a
RefseqXP_010655553.11e-144PREDICTED: heat stress transcription factor A-4a
TrEMBLA0A0U3TX721e-144A0A0U3TX72_VITPS; Transcription factor HsfA4a
STRINGXP_006449558.11e-140(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.13e-87heat shock transcription factor A4A