PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0670s0012.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 337aa    MW: 36938.9 Da    PI: 4.4839
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0670s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.91.2e-102592991055
                          HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r+RR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  Kalax.0670s0012.1.p 259 RKRRERINERLRILQSLVPNG-----TKVDISTMLEEAVQYVKFLQ 299
                          9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.932249298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-14253313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-12254311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-11255304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.65E-12258303No hitNo description
PfamPF000105.9E-8259299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEQTGVMSEE AWTSLGGMYT SGEEAELLTQ LLSGFSYPNE AARAAAFWPG EETSNDSSSV  60
EMSGDLTMTI CFMDGSFLVG SDSNSNSTER FFPQENSNFG SPDDGQSGLF PEGAFFHSDR  120
SCQMMLVGNE FSEGSKVGEN SGAGDSMDDL CEIKPVLDLE EPRKEVDIPE SKKRFRDASD  180
HVDKSKKSIK SNKYQKVIAV ASNNEPEQER SDSKRPGSMK EDSNGSPEVT GGEASTSKSS  240
KAKKASKKGS SDPQSLYARK RRERINERLR ILQSLVPNGT KVDISTMLEE AVQYVKFLQL  300
QIKLLSSDET WMYAPLAYNG MDIGISNFDM LNTSPR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.11e-33ROOT HAIR DEFECTIVE 6-LIKE 2