PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0670s0016.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 237aa    MW: 25447.6 Da    PI: 9.6372
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0670s0016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00027140162123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C++sF++   L  H r+H
  Kalax.0670s0016.1.p 140 HECSICHRSFPTGQALGGHKRLH 162
                          78*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.02E-790162No hitNo description
SMARTSM003550.07590112IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.32890117IPR007087Zinc finger, C2H2
PfamPF139129.0E-1190114IPR007087Zinc finger, C2H2
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
SMARTSM003550.1140162IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.619140162IPR007087Zinc finger, C2H2
PfamPF139122.6E-12140164IPR007087Zinc finger, C2H2
PROSITE patternPS000280142162IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009644Biological Processresponse to high light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010117Biological Processphotoprotection
GO:0010200Biological Processresponse to chitin
GO:0015979Biological Processphotosynthesis
GO:0035264Biological Processmulticellular organism growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MALEALNSPS TAHQLRFEEP EHHLFDKMSK GKRSKRSRSE ISNGNSAEEE YLAWCLIMLA  60
RGVSGRSETV KKQITTPQPQ PLAAALNLSH KCSVCHKAFP SHQALGGHKA SHRKNTASPD  120
NESAASIVTV AALPPGARSH ECSICHRSFP TGQALGGHKR LHYDGGNSSS SAVATTSSDG  180
AARSSRGFDL NLPALPDMRS IIGVNMKRSQ WAVEEEVESP HPSKKPRVFD LGLGQQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00162DAPTransfer from AT1G27730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002264302.15e-66PREDICTED: zinc finger protein ZAT10
TrEMBLF6H6631e-64F6H663_VITVI; Uncharacterized protein
STRINGVIT_03s0091g00690.t012e-65(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.12e-43salt tolerance zinc finger