PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0674s0016.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 359aa    MW: 40524.9 Da    PI: 7.1605
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0674s0016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00027199218120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          ++C+ C k+F+r  n++ H+
  Kalax.0674s0016.1.p 199 FSCHLCFKTFNRYNNMQMHM 218
                          89*****************9 PP
2zf-C2H214.50.0001283305123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C +Cgk F  + + ++H +++
  Kalax.0674s0016.1.p 283 FMCRKCGKAFAVRGDWRTHEKNC 305
                          89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.556199226IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.7E-4199218IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280201221IPR007087Zinc finger, C2H2
SuperFamilySSF576671.62E-6265303No hitNo description
Gene3DG3DSA:3.30.160.609.9E-6279303IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808283303IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MNDNHPYFSY PFNNGFFYSS SAAYSSSSQS FNNPANPYIS NSSTAFYLNY YNNLKNNFNN  60
NNSFTHHYNS PTPPPSPPLK QALPLLSLSP TRHNNVEQER QEGREMDQEA MAVDGDHEQD  120
QDDRCLSIDL QLGLPDVCVP SADLLISSSI SSSVDEGGAT IADSSNCSGY ESATPTTRLN  180
KGQYWIPTPA QILIGPTQFS CHLCFKTFNR YNNMQMHMWG HGSQYRRGPE SLRGTQPTAM  240
LRLPCYCCSP GCRNNIDHPR AKPLKDFRTL QTHYKRKHGM KPFMCRKCGK AFAVRGDWRT  300
HEKNCGKLWY CTCGSDFKHK RSLKDHIRAF GNGHAAYGID CFDQEDDEAE LSDIEQDN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021278475.11e-152zinc finger protein WIP2-like
SwissprotQ8W0311e-128ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLA0A061GTW41e-150A0A061GTW4_THECC; C2H2-type zinc finger family protein
STRINGEOY326021e-151(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-124C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]