PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0674s0026.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 381aa    MW: 41352.7 Da    PI: 6.6067
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0674s0026.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.4e-13320365655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR +i +++ +L+el+P+     +k  + +++L +Av+YIk+Lq
  Kalax.0674s0026.1.p 320 SIAERVRRTKISERMRRLQELVPNM----DKQTNTSDMLDMAVDYIKDLQ 365
                          689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.027314364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-16317377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.16E-12318369No hitNo description
Gene3DG3DSA:4.10.280.102.6E-15319375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-13320370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-10320365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0042335Biological Processcuticle development
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MDADLHQARQ FNPVVVVGGG GGSGGLTRYR SAPSSYFSNF GMEYKDVSDF LRPPPPKPLS  60
PQIDRIFAQL ASEIPGDHTL EVEAAITTPV MKLEIEPELP PAAPVMMASY TPSAGLPPPH  120
PLSRTSSGVN TSSHRGLKSS AAQPVRIPVV EKPSSGSNIA RHNSLPAGLF SQIDVHNVAA  180
AYFGTGSNQA NSSSDLMSAY SGIGNDNIKP EEDDDYMLNG FWNDSPSTEK LLTGVKRERA  240
EDEFLSGGAL EDIKPFSKDS NIPQAAGEMK KSGLLSHHLS LPKSSMEMLS AMEKFLDLQD  300
STTVPVGVRA KRGCATHPRS IAERVRRTKI SERMRRLQEL VPNMDKQTNT SDMLDMAVDY  360
IKDLQQRVQI LQACRERCTC *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00195DAPTransfer from AT1G51140Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-45bHLH family protein