PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0675s0002.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

WOX

Protein Properties

Length: 259aa MW: 29224 Da PI: 10.1159

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0675s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.7	5.6e-20	17	76	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++ + q+++Lee+++ r+p+a +++++A++l +++ ++V++WFqN++a+e++ Kalax.0675s0002.1.p 17 TRWNPAPGQIQALEEMYRCgLRTPTALQIQQIASQLrkfgKIEGKNVFYWFQNHKARERQ 76 7***************99************************************97 PP
2	Wus_type_Homeobox	109.1	2.6e-35	16	78	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+P p Qi+ Lee+y++GlrtP++ +iq+i+++L+++Gkie+kNVfyWFQN+kaRerqk+ Kalax.0675s0002.1.p 16 GTRWNPAPGQIQALEEMYRCGLRTPTALQIQQIASQLRKFGKIEGKNVFYWFQNHKARERQKR 78 68***********************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.7E-11	12	77	IPR009057	Homeodomain-like
SMART	SM00389	8.9E-5	14	81	IPR001356	Homeobox domain
CDD	cd00086	7.93E-4	17	78	No hit	No description
Pfam	PF00046	1.7E-17	17	76	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.5E-7	18	76	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.203	25	77	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MDKKELNESV QTLGTGTRWN PAPGQIQALE EMYRCGLRTP TALQIQQIAS QLRKFGKIEG 60 KNVFYWFQNH KARERQKRCR EFKSPASKQQ PKPTVPSLQQ QCCSQAMKSR KDSPLAMKRN 120 CAEQNSNSSW GHSTSHSLTL SRESVMYMHM QRAAAVVSHG SKQSVADGEA TVGSRRHAAT 180 WQVVQWSPAH LHFLHPLEFI ASNNLAQFNG VTVREDGAGE VETLQLFPTR NEECWSEARV 240 DQRGAKNIST PVHFFQFL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18010.1	6e-29	WUSCHEL related homeobox 1

Link Out ? help Back to Top
Phytozome	Kalax.0675s0002.1.p