PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0677s0017.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 343aa    MW: 37654.1 Da    PI: 7.8461
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0677s0017.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.94e-53151421128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeelvv+yLk+k+++ +l++ ++i+e+d+yk++Pw+Lp++++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+d+
  Kalax.0677s0017.1.p  15 LPPGFRFHPTDEELVVHYLKRKIDSLPLPV-SIIAEIDLYKFDPWELPSRATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDR 103
                          79****************************.89***************9888999*********************************** PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++l+  ++++vg+kk Lvfy g+ pkg+kt+W+mheyrl
  Kalax.0677s0017.1.p 104 PILTVnGTHKVGVKKALVFYGGKPPKGVKTSWIMHEYRL 142
                          **99867788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-648181IPR003441NAC domain
PROSITE profilePS5100561.22315181IPR003441NAC domain
PfamPF023657.0E-2816142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MESADSSTCS QHPQLPPGFR FHPTDEELVV HYLKRKIDSL PLPVSIIAEI DLYKFDPWEL  60
PSRATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDRPILTVNG THKVGVKKAL  120
VFYGGKPPKG VKTSWIMHEY RLVDGSAGNT AFKPPIADAN SSNKKASLRL DDWVLCRIYK  180
KANSQQPMDT SHHAGDSPTD EMLIPTSSRQ NYTGLLETPE ENDFFDGIMS HHLPHQLSAS  240
SMLTHLSPGP KKPTLSMVLP AQDHKRAVSE IWMGAGEFKK MNGGDSDERE YGGGSGSGGS  300
FAPLLSANGG GGYHQNFMLG PISGGDGYSS RPGYHQLNWN NS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-711518620173NAC domain-containing protein 19
3swm_B1e-711518620173NAC domain-containing protein 19
3swm_C1e-711518620173NAC domain-containing protein 19
3swm_D1e-711518620173NAC domain-containing protein 19
3swp_A1e-711518620173NAC domain-containing protein 19
3swp_B1e-711518620173NAC domain-containing protein 19
3swp_C1e-711518620173NAC domain-containing protein 19
3swp_D1e-711518620173NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004293567.11e-123PREDICTED: NAC transcription factor 25
SwissprotQ8GY421e-100NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A286LLT31e-116A0A286LLT3_ROSCH; NAC family protein
STRINGXP_004293567.11e-122(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-102NAC domain containing protein 25