PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0679s0010.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 364aa MW: 40929.4 Da PI: 6.7101

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0679s0010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164.4	4.1e-51	23	148	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 pGfrF Ptdeelv++yL++kve+k++++ + ik++diyk++PwdLpk+ + +++ewyfF+kr +ky+++ r+nr+t sg+Wkatg dk+ Kalax.0679s0010.1.p 23 LPGFRFYPTDEELVDFYLRRKVEKKPFSI-DLIKQIDIYKYDPWDLPKTSTVGDNEWYFFCKRGRKYRNSVRPNRVTGSGFWKATGIDKP 111 59*************************.99***********888889********************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++s++++l glkk+Lv+y+g+a kg+ktdW+mhe+rl Kalax.0679s0010.1.p 112 IHSSSSSLLGLKKSLVYYRGNAGKGTKTDWMMHEFRL 148 *********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	52.653	22	187	IPR003441	NAC domain
SuperFamily	SSF101941	2.35E-54	22	187	IPR003441	NAC domain
Pfam	PF02365	5.1E-25	24	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MEACIDDTRM SSSEREEDDE TQLPGFRFYP TDEELVDFYL RRKVEKKPFS IDLIKQIDIY 60 KYDPWDLPKT STVGDNEWYF FCKRGRKYRN SVRPNRVTGS GFWKATGIDK PIHSSSSSLL 120 GLKKSLVYYR GNAGKGTKTD WMMHEFRLPA PLDFITHNTP LPHPIITADS TDTQDAEVWT 180 VCRLFKRNVP SRKYTSNWRE ISTQRNPSSS SMGSMAAGPS NSSSAQACSS TTANNNDHKN 240 KSSNYICFTT AGTDQQQTAA LIQNPNYNNT SSHGDGMSRL TTVPAARLGH EQCSPKPFSY 300 NPMMQIQITN MPPTTPAPSS HPCAESSSVS PMDITLNEGL NTDQFATNES WDELGQFWNL 360 FQE*

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MEACIDDTRM SSSEREEDDE TQLPGFRFYP TDEELVDFYL RRKVEKKPFS IDLIKQIDIY  60
KYDPWDLPKT STVGDNEWYF FCKRGRKYRN SVRPNRVTGS GFWKATGIDK PIHSSSSSLL  120
GLKKSLVYYR GNAGKGTKTD WMMHEFRLPA PLDFITHNTP LPHPIITADS TDTQDAEVWT  180
VCRLFKRNVP SRKYTSNWRE ISTQRNPSSS SMGSMAAGPS NSSSAQACSS TTANNNDHKN  240
KSSNYICFTT AGTDQQQTAA LIQNPNYNNT SSHGDGMSRL TTVPAARLGH EQCSPKPFSY  300
NPMMQIQITN MPPTTPAPSS HPCAESSSVS PMDITLNEGL NTDQFATNES WDELGQFWNL  360
FQE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-50	15	193	7	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-50	15	193	7	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-50	15	193	7	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-50	15	193	7	171	NO APICAL MERISTEM PROTEIN
4dul_A	4e-50	15	193	7	171	NAC domain-containing protein 19
4dul_B	4e-50	15	193	7	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q9SK55	3e-80	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A1R3G5T0	3e-96	A0A1R3G5T0_9ROSI; No apical meristem (NAM) protein
STRING	cassava4.1_024488m	5e-92	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	2e-71	NAC domain containing protein 42

Link Out ? help Back to Top
Phytozome	Kalax.0679s0010.1.p

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]