PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0681s0007.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HB-other

Protein Properties

Length: 1089aa MW: 122573 Da PI: 8.3118

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0681s0007.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	39.7	8e-13	10	59	8	57
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ qle Le++++k+ryp+++e++ A++l+Lt +qV+ WF rR kek+ Kalax.0681s0007.1.p 10 TPLQLELLEQFYAKERYPTQSEMKNYAASLRLTLKQVRGWFVERRRKEKR 59 889**********************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	2.2E-13	2	64	IPR001356	Homeobox domain
CDD	cd00086	1.74E-6	5	54	No hit	No description
SuperFamily	SSF46689	5.13E-12	7	60	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.2E-13	8	60	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.009	10	60	IPR001356	Homeobox domain
Pfam	PF00046	4.3E-10	10	59	IPR001356	Homeobox domain
SMART	SM00571	6.7E-9	341	400	IPR018501	DDT domain
PROSITE profile	PS50827	12.466	341	400	IPR018501	DDT domain
Pfam	PF02791	2.2E-9	343	397	IPR018501	DDT domain
Pfam	PF15612	9.7E-5	620	652	IPR028942	WHIM1 domain
Pfam	PF15613	3.0E-10	746	819	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1089 aa Download sequence Send to blast
MEAGKPCVKT PLQLELLEQF YAKERYPTQS EMKNYAASLR LTLKQVRGWF VERRRKEKRE 60 KGGSELTSAY YAEKFRSICR SRETGKLSYP AIATINKPFR VQDRLWTPDY IISKILRKDG 120 PALGADFDSI PDRSSSESPA SRFAGQEAQG SPKRRKVCKR QDCNGKEVPG KKHGVGKGLI 180 TAWRVANPGA GCYPTGIGCD HVVPSIASSQ KLSVKRKQLQ RPRPLRKDDC LGNKKQEKKA 240 RVPLQRRKQV VHKLPGRKEC GLAVEEIASR EQHDLFGDLI DDEELELKEL QAGPNPVTCS 300 AHFATSTLHR CSFCKDLLSK FPPVSLKMKQ PFCIQPWHSS PEMVKQLFKV VHFLYTYAAV 360 FDIRPFTVDD FAQAFHDKDS LLLVEVHLSL LKFLLSDIKR ELSNGFSLQY STSCKFLRLL 420 QAVRHQDSVV DAWSRFLNPL TWTEILRQIF VAAGYGSKHS ISSKELQSKR EVNPMVKYGL 480 APGTLKGELF SILSHQGNKG LKVSELARST QIEALELNCT MDALELLISS ALSSDITLFE 540 KISPSAYRLR ISFTEENFQP DIEYSGTIND CSMNTIMDSS SDSEHDSGNS SLSQVDRQSW 600 RRKQKASRLS VDNEIDESHP GEVWLLGLAE SEYSNLRIEE KLNALVALVD LLRSISCFRY 660 EKEKECGLDT FPRRLHYGSG AKIKRSMVKQ NLTRPSWASW DQMHTRGDHP VDSSTSASKF 720 LLNEGSSSKK KGPVEAGDGF NSHPMQSVFL GSDRRYNQYW LFLGPCSDSD PGHRRIYFES 780 SEDGHWEVID SEEAFGVLRS VLDNRGTREA FLCASLQKRE RCLLQGMSSG NGISSGCRDG 840 EACDQNLISQ DSCSPVSDVD NTLSCCDSRN TPLALSCAIN LQKGDYQKQN WNKLQAFDKW 900 TWNSFYTTLN AVKYYRRSYL GSLARCEACH DLYWRDEKHC KVCHTTFELH FDLEEKYAIH 960 VATCKAMGEN DCSPTHKVLS SQLQSLKAAV YAVESAMPED SLTGSWRQSA HNLWSKRLRR 1020 TSSLAELLQV LTDFVGAINE DWVSACSAAA DSSSICEEVI KSFPPFPQTS AAVALWLVKL 1080 DALIAPFL*

Sequence ? help Back to Top

Protein Sequence Length: 1089 aa Download sequence Send to blast

MEAGKPCVKT PLQLELLEQF YAKERYPTQS EMKNYAASLR LTLKQVRGWF VERRRKEKRE  60
KGGSELTSAY YAEKFRSICR SRETGKLSYP AIATINKPFR VQDRLWTPDY IISKILRKDG  120
PALGADFDSI PDRSSSESPA SRFAGQEAQG SPKRRKVCKR QDCNGKEVPG KKHGVGKGLI  180
TAWRVANPGA GCYPTGIGCD HVVPSIASSQ KLSVKRKQLQ RPRPLRKDDC LGNKKQEKKA  240
RVPLQRRKQV VHKLPGRKEC GLAVEEIASR EQHDLFGDLI DDEELELKEL QAGPNPVTCS  300
AHFATSTLHR CSFCKDLLSK FPPVSLKMKQ PFCIQPWHSS PEMVKQLFKV VHFLYTYAAV  360
FDIRPFTVDD FAQAFHDKDS LLLVEVHLSL LKFLLSDIKR ELSNGFSLQY STSCKFLRLL  420
QAVRHQDSVV DAWSRFLNPL TWTEILRQIF VAAGYGSKHS ISSKELQSKR EVNPMVKYGL  480
APGTLKGELF SILSHQGNKG LKVSELARST QIEALELNCT MDALELLISS ALSSDITLFE  540
KISPSAYRLR ISFTEENFQP DIEYSGTIND CSMNTIMDSS SDSEHDSGNS SLSQVDRQSW  600
RRKQKASRLS VDNEIDESHP GEVWLLGLAE SEYSNLRIEE KLNALVALVD LLRSISCFRY  660
EKEKECGLDT FPRRLHYGSG AKIKRSMVKQ NLTRPSWASW DQMHTRGDHP VDSSTSASKF  720
LLNEGSSSKK KGPVEAGDGF NSHPMQSVFL GSDRRYNQYW LFLGPCSDSD PGHRRIYFES  780
SEDGHWEVID SEEAFGVLRS VLDNRGTREA FLCASLQKRE RCLLQGMSSG NGISSGCRDG  840
EACDQNLISQ DSCSPVSDVD NTLSCCDSRN TPLALSCAIN LQKGDYQKQN WNKLQAFDKW  900
TWNSFYTTLN AVKYYRRSYL GSLARCEACH DLYWRDEKHC KVCHTTFELH FDLEEKYAIH  960
VATCKAMGEN DCSPTHKVLS SQLQSLKAAV YAVESAMPED SLTGSWRQSA HNLWSKRLRR  1020
TSSLAELLQV LTDFVGAINE DWVSACSAAA DSSSICEEVI KSFPPFPQTS AAVALWLVKL  1080
DALIAPFL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	52	57	RRRKEK
2	52	59	RRRKEKRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010645137.1	0.0	PREDICTED: homeobox-DDT domain protein RLT3 isoform X2
TrEMBL	F6H9W6	0.0	F6H9W6_VITVI; Uncharacterized protein
STRING	VIT_19s0085g00350.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	0.0	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Kalax.0681s0007.1.p