PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0682s0007.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 117aa    MW: 13502.6 Da    PI: 8.0505
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0682s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.25.4e-1710861899
                         --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                         +p  f++++ gk   ++++ l  ++gr+W++ + +++++ +++ ++GWkeF++ n Lk+gDf+vF++ g+s+f   v +++k
  Kalax.0682s0007.1.p 10 VPIAFVRRFHGK--FPTEVLLDCRTGRTWRIGV-VKGGPYHMYCQRGWKEFAQGNSLKVGDFLVFRYAGNSKF--DVEIYEK 86
                         699999999888..7889**999**********.6888888****************************9999..7777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.607187IPR003340B3 DNA binding domain
SMARTSM010193.9E-7287IPR003340B3 DNA binding domain
SuperFamilySSF1019366.47E-20989IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-14985IPR003340B3 DNA binding domain
CDDcd100172.77E-131084No hitNo description
Gene3DG3DSA:2.40.330.105.3E-191089IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MISFTLLQLV PIAFVRRFHG KFPTEVLLDC RTGRTWRIGV VKGGPYHMYC QRGWKEFAQG  60
NSLKVGDFLV FRYAGNSKFD VEIYEKSGCL KEVSVVFEEP SDRPAMKTED WSLDEIT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-16B3 family protein