PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0682s0008.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 157aa    MW: 17612 Da    PI: 11.2254
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0682s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.33.7e-1551152296
                          EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..........EEETTE....EEE-TTHHHHHHHHT--TT CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliy........rkksgr....yvltkGWkeFvkangLkeg 77 
                          f v ++++ +++g + +p +f++++ ++   +sk+l+l++ +s+++W v ++         +    r    +   + W  F+++n+L++g
  Kalax.0682s0008.1.p  51 FGVALTASGFRRGHVNVPASFCKKFpEL---NSKQLKLRTaSSSEVWAVSCKSylgrrkdgK----RsamqTRVHGAWATFARDNELRVG 133
                          55667899999999*********99544...46789**996677*******66699744322....3434466679************** PP

                          -EEEEEE-SSSEE..EEEE CS
                   B3  78 DfvvFkldgrsefelvvkv 96 
                           ++vF+l++r++ e v+kv
  Kalax.0682s0008.1.p 134 NVCVFELVDRNSHEVVFKV 152
                          ******9988777676665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-1843156IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-1544156IPR015300DNA-binding pseudobarrel domain
CDDcd100174.90E-1449156No hitNo description
PROSITE profilePS5086311.92850156IPR003340B3 DNA binding domain
SMARTSM010190.001550154IPR003340B3 DNA binding domain
PfamPF023621.4E-1250152IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
VPAVHPFIPS PDNMSTQGRD TKDSQPRRQV QSPDPVAREQ ANKFNSNRPF FGVALTASGF  60
RRGHVNVPAS FCKKFPELNS KQLKLRTASS SEVWAVSCKS YLGRRKDGKR SAMQTRVHGA  120
WATFARDNEL RVGNVCVFEL VDRNSHEVVF KVHIFR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-09B3 family protein