PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0693s0014.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 429aa    MW: 46905.7 Da    PI: 5.3102
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0693s0014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.83.1e-11196247155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h ++Er+RR+++N+ +  Lr+l+P +   + ++ + a+i    +e++++L+
  Kalax.0693s0014.1.p 196 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGSIEFVRELE 247
                          79****************************...9****************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.5E-13194250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.63E-13194251No hitNo description
PROSITE profilePS5088815.008195246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.24E-15195261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-8196247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-8201252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048734.22E-4348414No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MSMDKVESYS AAASSSSMAP GAPAYAPVPE YSDQQQYMQQ LMKARAPPFT VPQHRSHGGP  60
SSSLMVDYTL NNNFNHQQQE QNTLLAGFSD VMQFADFGPK LGLNQSKMSS DDETGIDPVY  120
FLKFPVLNDK LEEEGGEQLL GVGEGEPAGA DQVGFEKSVV AAATAAPGDQ AAAAASGKNK  180
RKRGRAVKTS EEVESQRMTH IAVERNRRKQ MNEHLRVLRS LMPGSYVQRG DQASIIGGSI  240
EFVRELEQLL QCLESQKRRR LYGDNPSNSN PATRQIGGGV MGDATTVTGL VQQQQQHPMM  300
FPPPNCLSNV PGDHQTGFDA AVDQEEEIVE NKSCLADVEV KVLGFDAMIK VLSRRRPGQL  360
IRTIAALEDL KLVIMHTNIT TIEQTVLYSF NVKVSSETRY SAEDIASSVQ QIMQFYSCTY  420
QLASSNTI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196207RMTHIAVERNRR
2256260KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:17088607, PubMed:17183265, PubMed:17183267). Together with MYB88 and MYB124, ensures that stomata contain just two guard cells (GCs) by enforcing a single symmetric precursor cell division before stomatal maturity (PubMed:24571519). Together with SPCH and MUTE, regulates the stomata formation. Required to promote differentiation and morphogenesis of stomatal guard cells and to halt proliferative divisions in their immediate precursors. Mediates the formation of stomata (PubMed:17088607, PubMed:17183265, PubMed:17183267). Prevents histone H3K27me3 marks and derepresses stem cell gene expression (PubMed:24654956). {ECO:0000269|PubMed:17088607, ECO:0000269|PubMed:17183265, ECO:0000269|PubMed:17183267, ECO:0000269|PubMed:24571519, ECO:0000269|PubMed:24654956}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Inhibited by low relative humidity (LRH) via epigenetic CG methylation, thus leading to a reduced stomatal index. {ECO:0000269|PubMed:22442411}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012071156.11e-137transcription factor FAMA isoform X1
RefseqXP_020534625.11e-137transcription factor FAMA isoform X3
SwissprotQ56YJ81e-124FAMA_ARATH; Transcription factor FAMA
TrEMBLA0A067KT331e-136A0A067KT33_JATCU; Uncharacterized protein
STRINGcassava4.1_024031m1e-133(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.15e-85bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Matos JL, et al.
    Irreversible fate commitment in the Arabidopsis stomatal lineage requires a FAMA and RETINOBLASTOMA-RELATED module.
    Elife, 2015.
    [PMID:25303364]
  3. Chen L, et al.
    NRPB3, the third largest subunit of RNA polymerase II, is essential for stomatal patterning and differentiation in Arabidopsis.
    Development, 2016. 143(9): p. 1600-11
    [PMID:26989174]
  4. Lee JH,Jung JH,Park CM
    Light Inhibits COP1-Mediated Degradation of ICE Transcription Factors to Induce Stomatal Development in Arabidopsis.
    Plant Cell, 2017. 29(11): p. 2817-2830
    [PMID:29070509]
  5. Han X, et al.
    Jasmonate Negatively Regulates Stomatal Development in Arabidopsis Cotyledons.
    Plant Physiol., 2018. 176(4): p. 2871-2885
    [PMID:29496884]
  6. Li X,Yang R,Chen H
    The Arabidopsis thaliana Mediator subunit MED8 regulates plant immunity to Botrytis Cinerea through interacting with the basic helix-loop-helix (bHLH) transcription factor FAMA.
    PLoS ONE, 2018. 13(3): p. e0193458
    [PMID:29513733]