PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0697s0005.2.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

YABBY

Protein Properties

Length: 219aa MW: 24398.1 Da PI: 8.1124

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0697s0005.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	235.3	1.4e-72	20	185	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaes.hl.deslkeelleelkveeenlksnvekees 91 s s+q+Cyv+Cn C+t+lavsvP ++lfk+vtvrCGhCt+llsvn++ aa h +++ ++ ++ + +ee++++++ +++ Kalax.0697s0005.2.p 20 PSLSDQLCYVHCNLCDTVLAVSVPGSCLFKTVTVRCGHCTNLLSVNMRGLLLPPAAPPpHChATNFFNNPHNLMAMEEMQTNMTLMNQLP 109 5789****************************************99998654444313304455566777778888888888777766 PP YABBY 92 astsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + +++ + + ++e +p +pp++rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaaknWahfP+ihfgl Kalax.0697s0005.2.p 110 NPNEQMM--MMPVQTEFMP-APPAVRPPEKRQRVPSAYNRFIKEEIQRIKAENPDISHREAFSAAAKNWAHFPHIHFGL 185 6655544..4455677777.7999***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.7E-71	22	185	IPR006780	YABBY protein
SuperFamily	SSF47095	4.84E-9	130	178	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	7.6E-6	133	179	IPR009071	High mobility group box domain
CDD	cd01390	2.99E-6	139	175	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MSSSSASSFS PDHHILHHTP SLSDQLCYVH CNLCDTVLAV SVPGSCLFKT VTVRCGHCTN 60 LLSVNMRGLL LPPAAPPPHC HATNFFNNPH NLMAMEEMQT NMTLMNQLPN PNEQMMMMPV 120 QTEFMPAPPA VRPPEKRQRV PSAYNRFIKE EIQRIKAENP DISHREAFSA AAKNWAHFPH 180 IHFGLLPDQP VRRSGSNLLT QRRGAAEGRL LMTDGFLQ*

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269\|PubMed:17351053}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by WOX3. {ECO:0000269\|PubMed:17351053}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027335074.1	3e-83	axial regulator YABBY 1 isoform X1
Swissprot	Q01JG2	2e-66	YAB5_ORYSI; Protein YABBY 5
Swissprot	Q0JBF0	2e-66	YAB5_ORYSJ; Protein YABBY 5
TrEMBL	A0A0B6VNS8	1e-82	A0A0B6VNS8_SARPR; Filamentous flower
STRING	cassava4.1_016451m	2e-81	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	5e-66	YABBY family protein

Link Out ? help Back to Top
Phytozome	Kalax.0697s0005.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Khanday I, et al. Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties. Plant Physiol., 2016. 172(1): p. 372-88 [PMID:27457124]