PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0697s0005.3.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

YABBY

Protein Properties

Length: 202aa MW: 22524.9 Da PI: 7.8774

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0697s0005.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	235.7	1e-72	20	185	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaes.hl.deslkeelleelkveeenlksnvekees 91 s s+q+Cyv+Cn C+t+lavsvP ++lfk+vtvrCGhCt+llsvn++ aa h +++ ++ ++ + +ee++++++ +++ Kalax.0697s0005.3.p 20 PSLSDQLCYVHCNLCDTVLAVSVPGSCLFKTVTVRCGHCTNLLSVNMRGLLLPPAAPPpHChATNFFNNPHNLMAMEEMQTNMTLMNQLP 109 5789****************************************99998654444313304455566777778888888888777766 PP YABBY 92 astsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + +++ + + ++e +p +pp++rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaaknWahfP+ihfgl Kalax.0697s0005.3.p 110 NPNEQMM--MMPVQTEFMP-APPAVRPPEKRQRVPSAYNRFIKEEIQRIKAENPDISHREAFSAAAKNWAHFPHIHFGL 185 6655544..4455677777.7999***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.6E-71	22	185	IPR006780	YABBY protein
SuperFamily	SSF47095	4.19E-9	130	178	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	6.6E-6	133	179	IPR009071	High mobility group box domain
CDD	cd01390	2.35E-6	139	175	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MSSSSASSFS PDHHILHHTP SLSDQLCYVH CNLCDTVLAV SVPGSCLFKT VTVRCGHCTN 60 LLSVNMRGLL LPPAAPPPHC HATNFFNNPH NLMAMEEMQT NMTLMNQLPN PNEQMMMMPV 120 QTEFMPAPPA VRPPEKRQRV PSAYNRFIKE EIQRIKAENP DISHREAFSA AAKNWAHFPH 180 IHFGLLPDQP VRRSGSNLLT Q*

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269\|PubMed:17351053}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by WOX3. {ECO:0000269\|PubMed:17351053}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021620627.1	4e-82	axial regulator YABBY 1
Swissprot	Q01JG2	1e-65	YAB5_ORYSI; Protein YABBY 5
Swissprot	Q0JBF0	1e-65	YAB5_ORYSJ; Protein YABBY 5
TrEMBL	A0A2C9WPE7	9e-81	A0A2C9WPE7_MANES; Uncharacterized protein
STRING	cassava4.1_016451m	1e-81	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	7e-64	YABBY family protein

Link Out ? help Back to Top
Phytozome	Kalax.0697s0005.3.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Khanday I, et al. Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties. Plant Physiol., 2016. 172(1): p. 372-88 [PMID:27457124]