PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0702s0018.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 411aa MW: 45775.8 Da PI: 4.9002

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0702s0018.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.6	1.6e-11	241	283	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +ErrRR+r+N++++ Lr+++Pk + K++ +iL ++eY+k+L Kalax.0702s0018.1.p 241 LAERRRRKRLNDRLSLLRSIVPKiS------KMDRTSILGDTIEYMKEL 283 58*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.294	234	283	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.75E-15	238	298	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.2E-12	240	289	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.2E-9	241	283	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.5E-14	241	295	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.56E-5	248	288	No hit	No description
CDD	cd04873	7.46E-4	336	399	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MEISEEDFLQ ELLALRRSSQ TSSWDSTTST PTFSTHMTHN NNVVPNANNF ITTTNNTVWS 60 NNNSSFQITS SSSSPWDPPM DPQTFSTNHP PPFNQAFHNP TPRFPSSQHH PQLCSSAEHH 120 PHVMEEDETA SLFLVQHDGG GLYYNPFSGF EDHHYHQADV ASSLLDEDQS AMMMMMMMQS 180 DTQSLKIEPS AAATPSSDLL AVPSHVFNVG CGGSDFSERK SGGGGGKASK KVQGQPSKNL 240 LAERRRRKRL NDRLSLLRSI VPKISKMDRT SILGDTIEYM KELLERIQSL QDELDLDHHS 300 DDQVFLVDLF QDLKPNEVQI RNTPKFEVER RNPKDTRVEI CCSGKPGLLL STVNTMEALG 360 LEIEQCVISC FNDFAMHASC SEDVDTGNET DCEEIKQALF RNAGYGGQCL *

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MEISEEDFLQ ELLALRRSSQ TSSWDSTTST PTFSTHMTHN NNVVPNANNF ITTTNNTVWS  60
NNNSSFQITS SSSSPWDPPM DPQTFSTNHP PPFNQAFHNP TPRFPSSQHH PQLCSSAEHH  120
PHVMEEDETA SLFLVQHDGG GLYYNPFSGF EDHHYHQADV ASSLLDEDQS AMMMMMMMQS  180
DTQSLKIEPS AAATPSSDLL AVPSHVFNVG CGGSDFSERK SGGGGGKASK KVQGQPSKNL  240
LAERRRRKRL NDRLSLLRSI VPKISKMDRT SILGDTIEYM KELLERIQSL QDELDLDHHS  300
DDQVFLVDLF QDLKPNEVQI RNTPKFEVER RNPKDTRVEI CCSGKPGLLL STVNTMEALG  360
LEIEQCVISC FNDFAMHASC SEDVDTGNET DCEEIKQALF RNAGYGGQCL *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	242	249	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q9LSL1	1e-74	BH093_ARATH; Transcription factor bHLH93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	3e-63	beta HLH protein 93

Link Out ? help Back to Top
Phytozome	Kalax.0702s0018.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]