PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0708s0017.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ZF-HD
Protein Properties Length: 289aa    MW: 31674.2 Da    PI: 7.3114
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0708s0017.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer97.97.4e-3176130358
          ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                          + rY+eClkNhA+s+ ghavDGCgEfmp  g +g  aalkCaACgCHRnFHR+e++
  Kalax.0708s0017.1.p  76 RPRYRECLKNHAVSVMGHAVDGCGEFMPG-GPDGALAALKCAACGCHRNFHRKEEV 130
                          579*************************9.999********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047706.6E-2878129IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.9E-2778128IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257749.0E-1179128IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.48779128IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.75E-14184259IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-26189258IPR009057Homeodomain-like
TIGRFAMsTIGR015657.7E-23198254IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MEFDDHHHRE EEEEEEEEEA SDEMMMGNDR NISGGGGGGE VGNSLSRVRM AEAFSQVQIQ  60
PTPTMIVPPP PPLAARPRYR ECLKNHAVSV MGHAVDGCGE FMPGGPDGAL AALKCAACGC  120
HRNFHRKEEV PVVYTHTPHL THHQTPPGAF ASYYRTSPSG YLQLGAPRAR SLALPPSSGG  180
NDDVSNPNGG GRASSDGKTR FRTKFTAEQK QQMLAMAERI GWRIQRGVEE LVQQFCHEAA  240
VKRHVFKVWM HNNKHTLGRI SSTHPNTNTT NNNHSNGGAS NRQHQLMN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A4e-221982561775ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein. Putative transcription factor.
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021897413.17e-73LOW QUALITY PROTEIN: zinc-finger homeodomain protein 2-like
SwissprotQ6YXH56e-58ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
SwissprotQ9SB611e-58ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLA0A1U8AKJ62e-69A0A1U8AKJ6_NELNU; zinc-finger homeodomain protein 1-like
STRINGXP_010266504.13e-70(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-46homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]