PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0710s0012.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARR-B
Protein Properties Length: 600aa    MW: 65745.8 Da    PI: 6.7992
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0710s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.33.6e-28201254155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kpr++W+ eLH++Fv av++L G++kA+Pk+ilelm+v+ Lt+e+v+SHLQkYRl
  Kalax.0710s0012.1.p 201 KPRVVWSIELHRKFVAAVNHL-GIDKAVPKRILELMNVEKLTRENVASHLQKYRL 254
                          79*******************.********************************8 PP
2Response_reg71.92.6e-24201261107
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl vdD+p+ + ll+ +l++ +y +v++ +++ +al+ll+e++  +Dl++ D+ mp+mdG++ll++   e   lp+i+++a+g+++++ +
  Kalax.0710s0012.1.p  20 VLAVDDDPTCLLLLEGLLRRCKY-HVTTRTHAIAALNLLRENTnwFDLVISDVHMPDMDGFKLLEQVGLEM-GLPVIMLSAYGDPKLVMK 107
                          799********************.***************998889**********************6644.8***************** PP

                          HHHTTESEEEESS--HHHH CS
         Response_reg  89 alkaGakdflsKpfdpeel 107
                           +  Ga d+l Kp+ +eel
  Kalax.0710s0012.1.p 108 GITHGACDYLLKPVRIEEL 126
                          *****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363926.9E-1571599IPR017053Response regulator B-type, plant
SuperFamilySSF521728.54E-3617142IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.6E-4017171No hitNo description
SMARTSM004489.3E-3118130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.9119134IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.2E-2120127IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.06E-2121134No hitNo description
Gene3DG3DSA:1.10.10.601.5E-29198259IPR009057Homeodomain-like
PROSITE profilePS5129411.118198257IPR017930Myb domain
SuperFamilySSF466892.69E-19199258IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-25201254IPR006447Myb domain, plants
PfamPF002498.7E-6203253IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MTIEQRIEEP ADQFPVGMRV LAVDDDPTCL LLLEGLLRRC KYHVTTRTHA IAALNLLREN  60
TNWFDLVISD VHMPDMDGFK LLEQVGLEMG LPVIMLSAYG DPKLVMKGIT HGACDYLLKP  120
VRIEELQIIW QHVIRKKRVD PKDHKSSDNT HYSNTEAGQA GAGNGYPDQK SNKKRKDQVE  180
DEDEDHDDNE LENDDPSAQK KPRVVWSIEL HRKFVAAVNH LGIDKAVPKR ILELMNVEKL  240
TRENVASHLQ KYRLYLRRIS CVQSQQANMA AAFGTTDPAS YLRVNGMGGF NSLSGSPQFQ  300
NSAAFRSFQP NGMLGRLNSP ASLGGIQRLP SQFSGFSEQG VTLIPGNSTG CILKGMPMPM  360
PTSFELDQLQ DSNNRNANAK VDDLAVFPVT SGLPDVKKTA AGGLSGPHLP PPTSTLMLEG  420
HPVQSHSRVG IGNQSPAVFG SLTPDLSSHF SDRARGSDNW PVAIQSSTRH SHSYASYSAP  480
QHVSSHLDDG ASVTELPLSV TDYQYGSHSD IKPTWDSFAT AAAPMHSSSH STTAAYTNPR  540
RVTNAHSEFH AIEANYTVEN SATNAPSANF KRGYPNKPQT YQLPNSVGSL EDLVSSMMK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-26197260164ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023883435.11e-179two-component response regulator ARR12-like
TrEMBLA0A438KF931e-170A0A438KF93_VITVI; Two-component response regulator
TrEMBLB9RNX81e-170B9RNX8_RICCO; Two-component response regulator
STRINGVIT_04s0008g05900.t011e-171(Vitis vinifera)
STRINGXP_002515447.11e-171(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-127response regulator 12